CPTAC
Benchmarks
| Task Name | Dataset Name | SOTA Result | Trend | |
|---|---|---|---|---|
| Few-shot classification | CPTAC k=25 positive samples (test) | LUNG ST Accuracy98.1 | 45 | |
| Few-shot Classification | CPTAC | LUNG ST Accuracy97.8 | 45 | |
| Computational Pathology Classification | CPTAC k=10 (test) | LUNG ST92.9 | 30 | |
| Classification | CPTAC k=5 positive samples | Lung ST Performance91.7 | 30 | |
| Survival Prediction | CPTAC External (test) | C-Index65.18 | 27 | |
| Multi-cancer Classification | CPTAC Aggregate | Avg F1 Score50.2 | 23 | |
| Subtyping | CPTAC NSCLC | AUPRC99.5 | 23 | |
| Pathology Multiple Instance Learning (MIL) Classification | CPTAC external aggregated 23 tasks | AUC71.8 | 19 | |
| Classification | CPTAC 9x magnification (test) | ST (NSCLC) Accuracy99.4 | 19 | |
| Classification | CPTAC | NSCLC ST Accuracy99 | 19 | |
| HRD prediction | CPTAC-LUAD | AUC0.861 | 18 | |
| MSI prediction | CPTAC-CRC | AUC89.9 | 18 | |
| Gene Mutation Prediction | CPTAC | BRCA PIK3CA AUC0.6575 | 15 | |
| Few shot performance comparison (Balanced accuracy score) | CPTAC k=10 (test) | LUNG ST Balanced Accuracy92.9 | 15 | |
| Molecular Profile Prediction | CPTAC (test) | LUNG ST Prediction Score98 | 15 | |
| Few-shot Classification | CPTAC (k=10 samples) | LUNG ST Performance97.8 | 15 | |
| Few-shot Biomarker and Subtype Prediction | CPTAC TCGA-trained few-shot (k=25) (test) | Lung ST Score98.3 | 15 | |
| Classification | CPTAC 1.0 (k=25) | LUNG ST93.4 | 15 | |
| Few-shot classification | CPTAC k=5 positive samples (test) | LUNG ST Score96.8 | 15 | |
| Computational Pathology Classification | CPTAC k=25 (test) | Accuracy (LUNG ST)93.4 | 15 | |
| Few-shot Classification | CPTAC (test) | LUNG ST Performance93.4 | 15 | |
| Molecular Profile Prediction | CPTAC | LUNG ST Accuracy98.3 | 15 | |
| Molecular Profile Prediction | CPTAC | LUAD ST Score98 | 15 | |
| Few-shot Classification | CPTAC Few-shot k=5 TCGA features (test) | Lung ST Score96.8 | 15 | |
| Few-shot tissue subtyping and mutation prediction | CPTAC k=10 positive samples (test) | LUNG-ST92.8 | 15 |
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