PBMC

Benchmarks

Task Name	Dataset Name	SOTA Result
Perturbation prediction	PBMC	DE Overlap81	22
Single-cell Denoising	PBMC OpenProblems benchmark	Mean Score0.711	11
Single-Cell Gene Regulatory Network Inference	PBMC human	AUPRC0.244	10
On-domain cell identity prediction	PBMC10K	Macro F1 Score96	10
Denoising	PBMC (held-out)	Score0.71	9
Clustering	PBMC 3k	ARI92	9
Gene Representation Learning	PBMC (test)	Average Score92	9
Gene embedding	PBMC	Average Rank2.33	9
Cell type clustering	PBMC	ARI0.64	8
clustering	PBMC	ARI0.743	7
Representation Learning	PBMC3k	Rec Score88	7
scRNA-seq integration	pbmc	Batch Correction88.6	7
Symbolic Density Estimation	PBMC gene 4046	MSE0.1263	6
Biological process inference	pbmc3k	Mean LLM Confidence Score90.21	6
Gene rank reconstruction	PBMC12k	L-Dist6	6
Denoising	PBMC10k	SCC0.916	6
Gene Regulatory Network Inference	PBMC	p-value0.01	5
Single-cell Differential Abundance Estimation	PBMC semi-synthetic 68k cells	Correlation (rho) for AUC1	5
Batch effect correction	PBMC	Biological Conservation Score0.75	5
Multi-batch integration	PBMC12k	Batch Score0.9755	5
Clustering	PBMC	Homogeneity79.8	5
Dual condition generation	PBMC	WD5.37	4
Gene level performance	PBMC3k	MSE0.07	4
Single conditional generation	PBMC3K	WD16.94	4
Gene level performance evaluation	PBMC	MSE0.02	4

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