Pfam
Benchmarks
| Task Name | Dataset Name | SOTA Result | Trend | |
|---|---|---|---|---|
| Protein Sequence Pseudo-Perplexity Evaluation | Pfam Protein Families RRM, SH3, WW, Kunitz, zf-C2H2, PDZ, Pkinase, Defensin_beta | Pseudo-Perplexity4.32 | 16 | |
| Protein Homolog Retrieval | Pfam clan (test) | cR@193.77 | 6 | |
| Classification | Pfam | Accuracy62.3 | 6 | |
| Sequence Generation | Pfam Defensin_beta family | KL Divergence (AA)0.02 | 5 | |
| Sequence Generation | Pfam Pkinase family | KL Divergence (AA)0.035 | 5 | |
| Sequence Generation | Pfam PDZ family | KL Divergence (AA)0.038 | 5 | |
| Sequence Generation | Pfam zf-C2H2 family | KL Divergence (AA)0.007 | 5 | |
| Sequence Generation | Pfam Kunitz family | KL Divergence (AA)0.013 | 5 | |
| Sequence Generation | Pfam WW family | KL Divergence (AA)0.008 | 5 | |
| Sequence Generation | Pfam SH3 family | KL Divergence (AA)0.03 | 5 | |
| Sequence Generation | Pfam RRM family | KL Divergence (AA)0.06 | 5 | |
| Reconstruction | Pfam (test) | Reconstruction Error0.9881 | 2 |
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