PPI
Benchmarks
| Task Name | Dataset Name | SOTA Result | Trend | |
|---|---|---|---|---|
| Node Classification | PPI (test) | F1 (micro)90.5 | 126 | |
| Node classification | PPI | Node Classification Accuracy (PPI)0.996 | 30 | |
| Node Classification | PPI | Micro F125.28 | 29 | |
| Node Classification | PPI | F1 Score (micro)97.3 | 25 | |
| Node Embedding Learning | PPI | Time (s)0.2 | 20 | |
| Link Prediction | PPI 5 (test) | AUC77.19 | 20 | |
| Inductive Node Classification | PPI (test) | Micro F1 Score99.56 | 19 | |
| Protein function prediction | PPI (test) | ROC-AUC78.91 | 18 | |
| Protein function prediction | PPI 50-shot (test) | ROC-AUC54.03 | 15 | |
| Protein function prediction | PPI 100-shot (test) | ROC-AUC54.66 | 15 | |
| Graph property prediction | PPI | ROC AUC71.75 | 15 | |
| Inductive node classification | PPI (inductive) | Accuracy99.82 | 14 | |
| Link Prediction | PPI | Precision@1002.5 | 14 | |
| Node Classification | PPI inductive (test) | F1 Score97.37 | 14 | |
| Protein Function Prediction | PPI 40 tasks (test) | Mean AUC78.6 | 13 | |
| Node Classification | PPI (inductive) | Micro F1 Score98.1 | 12 | |
| Link Prediction | PPI | ROC AUC83.9 | 12 | |
| Link Prediction | PPI (test and probe set) | AUC0.939 | 11 | |
| Node-level classification | PPI | MCC0.99 | 7 | |
| Biomedical Interaction Prediction | PPI (test) | AUPRC93 | 7 | |
| Soft Query Answering | PPI5k | 1P Score66.9 | 6 | |
| Link Prediction | PPI Stanford SNAP (test) | ROC-AUC89.8 | 6 | |
| Link Prediction | PPI (50% test) | AUC0.9352 | 6 | |
| Adjacency Matrix Reconstruction | PPI (test) | ROC AUC0.9831 | 5 | |
| Multitask protein function prediction | PPI Partial FT Access - Unseen tasks (test) | AUC0.77 | 5 |
Showing 25 of 31 rows