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SchNet: A continuous-filter convolutional neural network for modeling quantum interactions

About

Deep learning has the potential to revolutionize quantum chemistry as it is ideally suited to learn representations for structured data and speed up the exploration of chemical space. While convolutional neural networks have proven to be the first choice for images, audio and video data, the atoms in molecules are not restricted to a grid. Instead, their precise locations contain essential physical information, that would get lost if discretized. Thus, we propose to use continuous-filter convolutional layers to be able to model local correlations without requiring the data to lie on a grid. We apply those layers in SchNet: a novel deep learning architecture modeling quantum interactions in molecules. We obtain a joint model for the total energy and interatomic forces that follows fundamental quantum-chemical principles. This includes rotationally invariant energy predictions and a smooth, differentiable potential energy surface. Our architecture achieves state-of-the-art performance for benchmarks of equilibrium molecules and molecular dynamics trajectories. Finally, we introduce a more challenging benchmark with chemical and structural variations that suggests the path for further work.

Kristof T. Sch\"utt, Pieter-Jan Kindermans, Huziel E. Sauceda, Stefan Chmiela, Alexandre Tkatchenko, Klaus-Robert M\"uller• 2017

Related benchmarks

TaskDatasetResultRank
Molecular property predictionQM9 (test)
mu33
263
Molecular property predictionBACE
ROC-AUC76.6
107
Molecular property predictionBBBP
ROC AUC0.848
93
Molecular property predictionMUV (test)
ROC-AUC68.2
93
Molecular property predictionQM9
Cv0.033
85
Molecular property predictionTox21
ROC AUC76.6
81
Molecular property predictionClinTox
ROC AUC71.7
76
Molecular Property Prediction (Regression)ESOL
RMSE1.045
69
ClassificationMoleculeNet BBBP (test)
ROC AUC0.708
59
Molecular Property Prediction (Regression)Lipophilicity
RMSE0.909
54
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