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E(n) Equivariant Normalizing Flows

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This paper introduces a generative model equivariant to Euclidean symmetries: E(n) Equivariant Normalizing Flows (E-NFs). To construct E-NFs, we take the discriminative E(n) graph neural networks and integrate them as a differential equation to obtain an invertible equivariant function: a continuous-time normalizing flow. We demonstrate that E-NFs considerably outperform baselines and existing methods from the literature on particle systems such as DW4 and LJ13, and on molecules from QM9 in terms of log-likelihood. To the best of our knowledge, this is the first flow that jointly generates molecule features and positions in 3D.

Victor Garcia Satorras, Emiel Hoogeboom, Fabian B. Fuchs, Ingmar Posner, Max Welling• 2021

Related benchmarks

TaskDatasetResultRank
3D Molecule GenerationQM9 (test)
Validity40.2
55
Point cloud generationDW4 (test)
NLL-15.29
24
Density EstimationLJ13 (test)
NLL-32.83
24
Point cloud generationLJ13 (test)
NLL-32.83
24
Controllable Molecule GenerationQM9 (test)
Alpha MAE (Bohr^3)0.1
22
3D Molecule GenerationGEOM-DRUG (test)
Atom Stability (%)75
22
Molecular GenerationQM9 (test)
Validity40.2
17
3D Molecule GenerationQM9 unconditional generation
Atom Stability85
16
Unconditional molecular generationQM9 standard
Atom Fidelity85
12
Molecular GenerationQM9
Atom Stability85
8
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