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A Stable Multi-Scale Kernel for Topological Machine Learning

About

Topological data analysis offers a rich source of valuable information to study vision problems. Yet, so far we lack a theoretically sound connection to popular kernel-based learning techniques, such as kernel SVMs or kernel PCA. In this work, we establish such a connection by designing a multi-scale kernel for persistence diagrams, a stable summary representation of topological features in data. We show that this kernel is positive definite and prove its stability with respect to the 1-Wasserstein distance. Experiments on two benchmark datasets for 3D shape classification/retrieval and texture recognition show considerable performance gains of the proposed method compared to an alternative approach that is based on the recently introduced persistence landscapes.

Jan Reininghaus, Stefan Huber, Ulrich Bauer, Roland Kwitt• 2014

Related benchmarks

TaskDatasetResultRank
Graph ClassificationMUTAG (10-fold cross-validation)
Accuracy66.5
236
Graph ClassificationNCI1 (10-fold cross-validation)
Accuracy61.2
119
Graph ClassificationENZYMES (10-fold cross-validation)
Accuracy21.2
94
ClassificationAirplane
Accuracy65.4
47
ClassificationTexture
Accuracy98.8
33
Binary ClassificationSynthesized persistence diagrams 100 (test)
Accuracy53.6
32
Graph ClassificationPTC MR (10-fold cross val)
Accuracy57.6
30
Graph ClassificationDHFR 10-fold CV
Accuracy61
13
Graph ClassificationCOX2 (10-fold CV)
Accuracy78.2
13
Topological Difference DetectionABIDE H0 I (children < 13 vs. adults ≥ 18)
P-value0.011
12
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