Semi-Explicit Neural DAEs: Learning Long-Horizon Dynamical Systems with Algebraic Constraints

Despite the promise of scientific machine learning (SciML) in combining data-driven techniques with mechanistic modeling, existing approaches for incorporating hard constraints in neural differential equations (NDEs) face significant limitations. Scalability issues and poor numerical properties prevent these neural models from being used for modeling physical systems with complicated conservation laws. We propose Manifold-Projected Neural ODEs (PNODEs), a method that explicitly enforces algebraic constraints by projecting each ODE step onto the constraint manifold. This framework arises naturally from semi-explicit differential-algebraic equations (DAEs), and includes both a robust iterative variant and a fast approximation requiring a single Jacobian factorization. We further demonstrate that prior works on relaxation methods are special cases of our approach. PNODEs consistently outperform baselines across six benchmark problems achieving a mean constraint violation error below $10^{-10}$. Additionally, PNODEs consistently achieve lower runtime compared to other methods for a given level of error tolerance. These results show that constraint projection offers a simple strategy for learning physically consistent long-horizon dynamics.