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De novo Drug Design using Reinforcement Learning with Multiple GPT Agents

About

De novo drug design is a pivotal issue in pharmacology and a new area of focus in AI for science research. A central challenge in this field is to generate molecules with specific properties while also producing a wide range of diverse candidates. Although advanced technologies such as transformer models and reinforcement learning have been applied in drug design, their potential has not been fully realized. Therefore, we propose MolRL-MGPT, a reinforcement learning algorithm with multiple GPT agents for drug molecular generation. To promote molecular diversity, we encourage the agents to collaborate in searching for desirable molecules in diverse directions. Our algorithm has shown promising results on the GuacaMol benchmark and exhibits efficacy in designing inhibitors against SARS-CoV-2 protein targets. The codes are available at: https://github.com/HXYfighter/MolRL-MGPT.

Xiuyuan Hu, Guoqing Liu, Yang Zhao, Hao Zhang• 2023

Related benchmarks

TaskDatasetResultRank
de novo molecular designGuacaMol goal-directed tasks
Osimertinib MPO Score0.977
23
Molecular DesignSARS-CoV-2 PLPro_7JIR (test)
Avg Top-100 Score0.772
7
Molecular DesignSARS-CoV-2 RdRp_6YYT (test)
Average Top-100 Score0.854
7
Molecular DesignSARS-CoV-2 RdRp_6YYT target
Docking Score-11.84
5
Molecular GenerationGuacaMol QED top-100
Mean Score0.948
5
Molecule GenerationSARS-CoV-2 PLPro target 7JIR (top-100 drug candidates)
Docking Score-11.02
5
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Other info

Code

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