Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models
About
Large Language Models (LLMs), with their remarkable task-handling capabilities and innovative outputs, have catalyzed significant advancements across a spectrum of fields. However, their proficiency within specialized domains such as biomolecular studies remains limited. To address this challenge, we introduce Mol-Instructions, a comprehensive instruction dataset designed for the biomolecular domain. Mol-Instructions encompasses three key components: molecule-oriented instructions, protein-oriented instructions, and biomolecular text instructions. Each component aims to improve the understanding and prediction capabilities of LLMs concerning biomolecular features and behaviors. Through extensive instruction tuning experiments on LLMs, we demonstrate the effectiveness of Mol-Instructions in enhancing large models' performance in the intricate realm of biomolecular studies, thus fostering progress in the biomolecular research community. Mol-Instructions is publicly available for ongoing research and will undergo regular updates to enhance its applicability.
Related benchmarks
| Task | Dataset | Result | Rank | |
|---|---|---|---|---|
| Molecular property prediction | QM9 (test) | -- | 174 | |
| Molecule Captioning | ChEBI-20 (test) | BLEU-40.1995 | 107 | |
| Text-guided molecule generation | ChEBI-20 (test) | MACCS FTS Similarity41.2 | 48 | |
| Molecular Property Classification | MoleculeNet BBBP | ROC AUC58 | 41 | |
| Molecular Property Classification | MoleculeNet BACE | ROC AUC41.7 | 36 | |
| Molecule Description Generation | ChEBI-20 (test) | BLEU-20.249 | 34 | |
| Molecular Property Classification | MoleculeNet ClinTox | ROC-AUC47.8 | 27 | |
| Retrosynthesis | Mol-Instructions | Exact Match6.9 | 24 | |
| Reagent Prediction | Mol-Instructions | Exact Match4.4 | 24 | |
| Forward reaction prediction | Mol-Instructions | Exact Match5.2 | 24 |