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Subgraph Matching Kernels for Attributed Graphs

About

We propose graph kernels based on subgraph matchings, i.e. structure-preserving bijections between subgraphs. While recently proposed kernels based on common subgraphs (Wale et al., 2008; Shervashidze et al., 2009) in general can not be applied to attributed graphs, our approach allows to rate mappings of subgraphs by a flexible scoring scheme comparing vertex and edge attributes by kernels. We show that subgraph matching kernels generalize several known kernels. To compute the kernel we propose a graph-theoretical algorithm inspired by a classical relation between common subgraphs of two graphs and cliques in their product graph observed by Levi (1973). Encouraging experimental results on a classification task of real-world graphs are presented.

Nils Kriege, Petra Mutzel• 2012

Related benchmarks

TaskDatasetResultRank
Graph ClassificationPROTEINS
Accuracy76.38
742
Graph ClassificationMUTAG
Accuracy87.52
697
Graph ClassificationNCI1
Accuracy82.58
460
Graph ClassificationCOLLAB
Accuracy81.26
329
Graph ClassificationIMDB-B
Accuracy71.58
322
Graph ClassificationMutag (test)
Accuracy87.52
217
Graph ClassificationMUTAG (10-fold cross-validation)
Accuracy85.4
206
Graph ClassificationPROTEINS (test)
Accuracy76.38
180
Graph ClassificationDD
Accuracy82.51
175
Graph ClassificationNCI1 (test)
Accuracy82.58
174
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