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Faster Kernels for Graphs with Continuous Attributes via Hashing

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While state-of-the-art kernels for graphs with discrete labels scale well to graphs with thousands of nodes, the few existing kernels for graphs with continuous attributes, unfortunately, do not scale well. To overcome this limitation, we present hash graph kernels, a general framework to derive kernels for graphs with continuous attributes from discrete ones. The idea is to iteratively turn continuous attributes into discrete labels using randomized hash functions. We illustrate hash graph kernels for the Weisfeiler-Lehman subtree kernel and for the shortest-path kernel. The resulting novel graph kernels are shown to be, both, able to handle graphs with continuous attributes and scalable to large graphs and data sets. This is supported by our theoretical analysis and demonstrated by an extensive experimental evaluation.

Christopher Morris, Nils M. Kriege, Kristian Kersting, Petra Mutzel• 2016

Related benchmarks

TaskDatasetResultRank
Graph ClassificationPROTEINS
Accuracy75.93
1383
Graph ClassificationIMDB-B
Accuracy73.12
455
Graph ClassificationENZYMES
Accuracy66.36
419
Graph ClassificationPROTEINS (10-fold cross-validation)
Accuracy75.14
223
Graph ClassificationD&D
Accuracy79.01
179
Graph ClassificationBZR
Accuracy78.59
179
Graph ClassificationCOX2
Accuracy78.13
175
Graph ClassificationCOX2-MD
Accuracy74.61
25
Graph ClassificationSYNTHETIC-NEW (test)
Accuracy95.96
6
Graph ClassificationSYNTHIE (test)
Accuracy85.82
6
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