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Gated Graph Sequence Neural Networks

About

Graph-structured data appears frequently in domains including chemistry, natural language semantics, social networks, and knowledge bases. In this work, we study feature learning techniques for graph-structured inputs. Our starting point is previous work on Graph Neural Networks (Scarselli et al., 2009), which we modify to use gated recurrent units and modern optimization techniques and then extend to output sequences. The result is a flexible and broadly useful class of neural network models that has favorable inductive biases relative to purely sequence-based models (e.g., LSTMs) when the problem is graph-structured. We demonstrate the capabilities on some simple AI (bAbI) and graph algorithm learning tasks. We then show it achieves state-of-the-art performance on a problem from program verification, in which subgraphs need to be matched to abstract data structures.

Yujia Li, Daniel Tarlow, Marc Brockschmidt, Richard Zemel• 2015

Related benchmarks

TaskDatasetResultRank
Graph ClassificationPROTEINS
Accuracy72.5
742
Node ClassificationPubmed
Accuracy75.8
742
Graph ClassificationMUTAG
Accuracy74.6
697
Graph ClassificationNCI1
Accuracy69
460
Graph ClassificationCOLLAB
Accuracy79.6
329
Graph ClassificationIMDB-B
Accuracy72.3
322
Graph ClassificationNCI109
Accuracy67.87
223
Molecular property predictionQM9 (test)
mu1.22
174
Graph ClassificationD&D
Accuracy71.38
110
Graph ClassificationREDDIT BINARY
Accuracy87.4
107
Showing 10 of 34 rows

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