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Time-to-Event Prediction with Neural Networks and Cox Regression

About

New methods for time-to-event prediction are proposed by extending the Cox proportional hazards model with neural networks. Building on methodology from nested case-control studies, we propose a loss function that scales well to large data sets, and enables fitting of both proportional and non-proportional extensions of the Cox model. Through simulation studies, the proposed loss function is verified to be a good approximation for the Cox partial log-likelihood. The proposed methodology is compared to existing methodologies on real-world data sets, and is found to be highly competitive, typically yielding the best performance in terms of Brier score and binomial log-likelihood. A python package for the proposed methods is available at https://github.com/havakv/pycox.

H{\aa}vard Kvamme, {\O}rnulf Borgan, Ida Scheel• 2019

Related benchmarks

TaskDatasetResultRank
Survival PredictionMETABRIC
C-index0.6622
21
Survival PredictionSUPPORT
C-index (%)61.54
21
Survival PredictionRotGBSG
C-index67.41
14
Survival PredictionSUPPORT
IBS19.17
14
Survival PredictionMETABRIC
IBS16.54
14
Survival PredictionFLCHAIN
C-index0.7895
14
Survival PredictionRotGBSG
IBS17.8
14
Survival AnalysisSUPPORT (5-fold cross-val)
Integrated Brier Score0.212
11
Survival AnalysisMETABRIC (5-fold cross-validation)
C-Index0.675
11
Survival AnalysisSUPPORT (5-fold cross-validation)
Concordance Index0.639
11
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