Time-to-Event Prediction with Neural Networks and Cox Regression
About
New methods for time-to-event prediction are proposed by extending the Cox proportional hazards model with neural networks. Building on methodology from nested case-control studies, we propose a loss function that scales well to large data sets, and enables fitting of both proportional and non-proportional extensions of the Cox model. Through simulation studies, the proposed loss function is verified to be a good approximation for the Cox partial log-likelihood. The proposed methodology is compared to existing methodologies on real-world data sets, and is found to be highly competitive, typically yielding the best performance in terms of Brier score and binomial log-likelihood. A python package for the proposed methods is available at https://github.com/havakv/pycox.
Related benchmarks
| Task | Dataset | Result | Rank | |
|---|---|---|---|---|
| Survival Prediction | METABRIC | C-index0.6622 | 21 | |
| Survival Prediction | SUPPORT | C-index (%)61.54 | 21 | |
| Survival Prediction | RotGBSG | C-index67.41 | 14 | |
| Survival Prediction | SUPPORT | IBS19.17 | 14 | |
| Survival Prediction | METABRIC | IBS16.54 | 14 | |
| Survival Prediction | FLCHAIN | C-index0.7895 | 14 | |
| Survival Prediction | RotGBSG | IBS17.8 | 14 | |
| Survival Analysis | SUPPORT (5-fold cross-val) | Integrated Brier Score0.212 | 11 | |
| Survival Analysis | METABRIC (5-fold cross-validation) | C-Index0.675 | 11 | |
| Survival Analysis | SUPPORT (5-fold cross-validation) | Concordance Index0.639 | 11 |