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Combining 3D Image and Tabular Data via the Dynamic Affine Feature Map Transform

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Prior work on diagnosing Alzheimer's disease from magnetic resonance images of the brain established that convolutional neural networks (CNNs) can leverage the high-dimensional image information for classifying patients. However, little research focused on how these models can utilize the usually low-dimensional tabular information, such as patient demographics or laboratory measurements. We introduce the Dynamic Affine Feature Map Transform (DAFT), a general-purpose module for CNNs that dynamically rescales and shifts the feature maps of a convolutional layer, conditional on a patient's tabular clinical information. We show that DAFT is highly effective in combining 3D image and tabular information for diagnosis and time-to-dementia prediction, where it outperforms competing CNNs with a mean balanced accuracy of 0.622 and mean c-index of 0.748, respectively. Our extensive ablation study provides valuable insights into the architectural properties of DAFT. Our implementation is available at https://github.com/ai-med/DAFT.

Sebastian P\"olsterl, Tom Nuno Wolf, Christian Wachinger• 2021

Related benchmarks

TaskDatasetResultRank
PH classificationASPIRE (test)
Accuracy88.51
15
mPAP regressionASPIRE (test)
MAE7.74
15
In-hospital mortality(EHR + CXR)PAIRED (test)
AUROC0.828
11
Phenotyping(EHR + CXR)PAIRED (test)
AUROC0.737
11
pMCI classificationADNI pMCI
Balanced Accuracy78.06
8
Mortality PredictionMIMIC 24 ≤ δ < 36 IV (test)
AUROC0.776
7
Mortality PredictionClinical Multi-modal Dataset 24 ≤ δ < 36h (test)
AUPRC50.8
7
Mortality PredictionMIMIC Overall IV (test)
AUROC0.8
7
Mortality PredictionMIMIC (12 ≤ δ < 24) IV (test)
AUROC78.2
7
In-hospital mortality predictionMIMIC (test)
AUPRC0.448
7
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