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E(n) Equivariant Graph Neural Networks

About

This paper introduces a new model to learn graph neural networks equivariant to rotations, translations, reflections and permutations called E(n)-Equivariant Graph Neural Networks (EGNNs). In contrast with existing methods, our work does not require computationally expensive higher-order representations in intermediate layers while it still achieves competitive or better performance. In addition, whereas existing methods are limited to equivariance on 3 dimensional spaces, our model is easily scaled to higher-dimensional spaces. We demonstrate the effectiveness of our method on dynamical systems modelling, representation learning in graph autoencoders and predicting molecular properties.

Victor Garcia Satorras, Emiel Hoogeboom, Max Welling• 2021

Related benchmarks

TaskDatasetResultRank
Molecular property predictionQM9 (test)
mu29
263
Molecular property predictionMUV (test)
ROC-AUC68.6
93
Molecular property predictionQM9
Cv0.031
85
Protein-ligand binding affinity predictionPDBbind Sequence Identity (30%) 2017
RMSE1.483
82
ClassificationMoleculeNet BBBP (test)
ROC AUC0.721
59
Drug target binding affinity predictionPDBbind Core Set v2016
RMSE1.289
47
Protein-ligand binding affinity predictionPDBbind core set 2013
RMSE1.498
41
molecule property predictionHIV MoleculeNet (test)
AUROC70.4
40
Force PredictionMD17 (test)
Aspirin Force Error10.2
39
Protein-ligand binding affinity predictionPDBbind 2019 (holdout set)
RMSE1.399
38
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