E(n) Equivariant Graph Neural Networks
About
This paper introduces a new model to learn graph neural networks equivariant to rotations, translations, reflections and permutations called E(n)-Equivariant Graph Neural Networks (EGNNs). In contrast with existing methods, our work does not require computationally expensive higher-order representations in intermediate layers while it still achieves competitive or better performance. In addition, whereas existing methods are limited to equivariance on 3 dimensional spaces, our model is easily scaled to higher-dimensional spaces. We demonstrate the effectiveness of our method on dynamical systems modelling, representation learning in graph autoencoders and predicting molecular properties.
Victor Garcia Satorras, Emiel Hoogeboom, Max Welling• 2021
Related benchmarks
| Task | Dataset | Result | Rank | |
|---|---|---|---|---|
| Molecular property prediction | QM9 (test) | mu29 | 263 | |
| Molecular property prediction | MUV (test) | ROC-AUC68.6 | 93 | |
| Molecular property prediction | QM9 | Cv0.031 | 85 | |
| Protein-ligand binding affinity prediction | PDBbind Sequence Identity (30%) 2017 | RMSE1.483 | 82 | |
| Classification | MoleculeNet BBBP (test) | ROC AUC0.721 | 59 | |
| Drug target binding affinity prediction | PDBbind Core Set v2016 | RMSE1.289 | 47 | |
| Protein-ligand binding affinity prediction | PDBbind core set 2013 | RMSE1.498 | 41 | |
| molecule property prediction | HIV MoleculeNet (test) | AUROC70.4 | 40 | |
| Force Prediction | MD17 (test) | Aspirin Force Error10.2 | 39 | |
| Protein-ligand binding affinity prediction | PDBbind 2019 (holdout set) | RMSE1.399 | 38 |
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