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RepMode: Learning to Re-parameterize Diverse Experts for Subcellular Structure Prediction

About

In biological research, fluorescence staining is a key technique to reveal the locations and morphology of subcellular structures. However, it is slow, expensive, and harmful to cells. In this paper, we model it as a deep learning task termed subcellular structure prediction (SSP), aiming to predict the 3D fluorescent images of multiple subcellular structures from a 3D transmitted-light image. Unfortunately, due to the limitations of current biotechnology, each image is partially labeled in SSP. Besides, naturally, subcellular structures vary considerably in size, which causes the multi-scale issue of SSP. To overcome these challenges, we propose Re-parameterizing Mixture-of-Diverse-Experts (RepMode), a network that dynamically organizes its parameters with task-aware priors to handle specified single-label prediction tasks. In RepMode, the Mixture-of-Diverse-Experts (MoDE) block is designed to learn the generalized parameters for all tasks, and gating re-parameterization (GatRep) is performed to generate the specialized parameters for each task, by which RepMode can maintain a compact practical topology exactly like a plain network, and meanwhile achieves a powerful theoretical topology. Comprehensive experiments show that RepMode can achieve state-of-the-art overall performance in SSP.

Donghao Zhou, Chunbin Gu, Junde Xu, Furui Liu, Qiong Wang, Guangyong Chen, Pheng-Ann Heng• 2022

Related benchmarks

TaskDatasetResultRank
Subcellular structure predictionActom. Bundle (test)
MSE0.6572
9
Subcellular structure predictionDesmosome (test)
MSE0.8358
9
Subcellular structure predictiondna (test)
MSE0.4852
9
Subcellular structure predictionEndop. Reticulum (test)
MSE0.4046
9
Subcellular structure predictionGolgi Apparatus (test)
MSE0.7792
9
Subcellular structure predictionMicrotubule (test)
MSE0.3389
9
Subcellular structure predictionMitochondria (test)
MSE0.4459
9
Subcellular structure predictionNuclear Envelope (test)
MSE0.2631
9
Subcellular structure predictionNucleolus (test)
MSE0.1995
9
Subcellular structure predictionTight Junction (test)
MSE0.6168
9
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