RepMode: Learning to Re-parameterize Diverse Experts for Subcellular Structure Prediction
About
In biological research, fluorescence staining is a key technique to reveal the locations and morphology of subcellular structures. However, it is slow, expensive, and harmful to cells. In this paper, we model it as a deep learning task termed subcellular structure prediction (SSP), aiming to predict the 3D fluorescent images of multiple subcellular structures from a 3D transmitted-light image. Unfortunately, due to the limitations of current biotechnology, each image is partially labeled in SSP. Besides, naturally, subcellular structures vary considerably in size, which causes the multi-scale issue of SSP. To overcome these challenges, we propose Re-parameterizing Mixture-of-Diverse-Experts (RepMode), a network that dynamically organizes its parameters with task-aware priors to handle specified single-label prediction tasks. In RepMode, the Mixture-of-Diverse-Experts (MoDE) block is designed to learn the generalized parameters for all tasks, and gating re-parameterization (GatRep) is performed to generate the specialized parameters for each task, by which RepMode can maintain a compact practical topology exactly like a plain network, and meanwhile achieves a powerful theoretical topology. Comprehensive experiments show that RepMode can achieve state-of-the-art overall performance in SSP.
Related benchmarks
| Task | Dataset | Result | Rank | |
|---|---|---|---|---|
| Subcellular structure prediction | Actom. Bundle (test) | MSE0.6572 | 9 | |
| Subcellular structure prediction | Desmosome (test) | MSE0.8358 | 9 | |
| Subcellular structure prediction | dna (test) | MSE0.4852 | 9 | |
| Subcellular structure prediction | Endop. Reticulum (test) | MSE0.4046 | 9 | |
| Subcellular structure prediction | Golgi Apparatus (test) | MSE0.7792 | 9 | |
| Subcellular structure prediction | Microtubule (test) | MSE0.3389 | 9 | |
| Subcellular structure prediction | Mitochondria (test) | MSE0.4459 | 9 | |
| Subcellular structure prediction | Nuclear Envelope (test) | MSE0.2631 | 9 | |
| Subcellular structure prediction | Nucleolus (test) | MSE0.1995 | 9 | |
| Subcellular structure prediction | Tight Junction (test) | MSE0.6168 | 9 |