From Relational Pooling to Subgraph GNNs: A Universal Framework for More Expressive Graph Neural Networks
About
Relational pooling is a framework for building more expressive and permutation-invariant graph neural networks. However, there is limited understanding of the exact enhancement in the expressivity of RP and its connection with the Weisfeiler Lehman hierarchy. Starting from RP, we propose to explicitly assign labels to nodes as additional features to improve expressive power of message passing neural networks. The method is then extended to higher dimensional WL, leading to a novel $k,l$-WL algorithm, a more general framework than $k$-WL. Theoretically, we analyze the expressivity of $k,l$-WL with respect to $k$ and $l$ and unifies it with a great number of subgraph GNNs. Complexity reduction methods are also systematically discussed to build powerful and practical $k,l$-GNN instances. We theoretically and experimentally prove that our method is universally compatible and capable of improving the expressivity of any base GNN model. Our $k,l$-GNNs achieve superior performance on many synthetic and real-world datasets, which verifies the effectiveness of our framework.
Related benchmarks
| Task | Dataset | Result | Rank | |
|---|---|---|---|---|
| Molecular property prediction | QM9 (test) | mu0.398 | 245 | |
| Molecular property prediction | PCQM4M V2 | MAE0.0882 | 10 | |
| Molecular property prediction | Molecule3D (random) | MAE0.0474 | 9 | |
| Molecular property prediction | Molecule3D (scaffold) | MAE0.156 | 9 |