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CIN++: Enhancing Topological Message Passing

About

Graph Neural Networks (GNNs) have demonstrated remarkable success in learning from graph-structured data. However, they face significant limitations in expressive power, struggling with long-range interactions and lacking a principled approach to modeling higher-order structures and group interactions. Cellular Isomorphism Networks (CINs) recently addressed most of these challenges with a message passing scheme based on cell complexes. Despite their advantages, CINs make use only of boundary and upper messages which do not consider a direct interaction between the rings present in the underlying complex. Accounting for these interactions might be crucial for learning representations of many real-world complex phenomena such as the dynamics of supramolecular assemblies, neural activity within the brain, and gene regulation processes. In this work, we propose CIN++, an enhancement of the topological message passing scheme introduced in CINs. Our message passing scheme accounts for the aforementioned limitations by letting the cells to receive also lower messages within each layer. By providing a more comprehensive representation of higher-order and long-range interactions, our enhanced topological message passing scheme achieves state-of-the-art results on large-scale and long-range chemistry benchmarks.

Lorenzo Giusti, Teodora Reu, Francesco Ceccarelli, Cristian Bodnar, Pietro Li\`o• 2023

Related benchmarks

TaskDatasetResultRank
Graph ClassificationPROTEINS
Accuracy80.5
742
Graph ClassificationMUTAG
Accuracy94.4
697
Graph ClassificationNCI1
Accuracy85.3
460
Graph ClassificationNCI109
Accuracy84.5
223
Graph ClassificationPROTEINS (10-fold cross-validation)
Accuracy80.5
197
Graph ClassificationPTC-MR
Accuracy73.2
153
Graph RegressionPeptides struct (test)
MAE0.2523
84
Graph ClassificationNCI1 (10-fold cross-validation)
Accuracy85.3
82
Graph ClassificationPeptides-func (test)
AP65.69
82
Graph RegressionZINC subset (test)
MAE0.077
56
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