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DiffMix: Diffusion Model-based Data Synthesis for Nuclei Segmentation and Classification in Imbalanced Pathology Image Datasets

About

Nuclei segmentation and classification is a significant process in pathology image analysis. Deep learning-based approaches have greatly contributed to the higher accuracy of this task. However, those approaches suffer from the imbalanced nuclei data composition, which shows lower classification performance on the rare nuclei class. In this paper, we propose a realistic data synthesis method using a diffusion model. We generate two types of virtual patches to enlarge the training data distribution, which is for balancing the nuclei class variance and for enlarging the chance to look at various nuclei. After that, we use a semantic-label-conditioned diffusion model to generate realistic and high-quality image samples. We demonstrate the efficacy of our method by experiment results on two imbalanced nuclei datasets, improving the state-of-the-art networks. The experimental results suggest that the proposed method improves the classification performance of the rare type nuclei classification, while showing superior segmentation and classification performance in imbalanced pathology nuclei datasets.

Hyun-Jic Oh, Won-Ki Jeong• 2023

Related benchmarks

TaskDatasetResultRank
Nuclear Instance SegmentationCoNSeP
AJI57
32
Nuclei SegmentationGLySAC
AJI0.673
20
Nuclei ClassificationGLySAC
Accuracy71.9
10
Nuclei ClassificationCoNSeP
Accuracy87.3
10
Mask-to-Image FaithfulnessBRCA TCGA (test)
Faithfulness Score73.12
10
Mask-to-Image FaithfulnessLUAD TCGA (test)
Faithfulness Score72.45
10
Mask-to-Image FaithfulnessBLCA TCGA (test)
Faithfulness Score71.23
10
Mask-to-Image FaithfulnessGBMLGG TCGA (test)
Faithfulness Score70.89
10
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