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An Explainable Deep Framework: Towards Task-Specific Fusion for Multi-to-One MRI Synthesis

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Multi-sequence MRI is valuable in clinical settings for reliable diagnosis and treatment prognosis, but some sequences may be unusable or missing for various reasons. To address this issue, MRI synthesis is a potential solution. Recent deep learning-based methods have achieved good performance in combining multiple available sequences for missing sequence synthesis. Despite their success, these methods lack the ability to quantify the contributions of different input sequences and estimate the quality of generated images, making it hard to be practical. Hence, we propose an explainable task-specific synthesis network, which adapts weights automatically for specific sequence generation tasks and provides interpretability and reliability from two sides: (1) visualize the contribution of each input sequence in the fusion stage by a trainable task-specific weighted average module; (2) highlight the area the network tried to refine during synthesizing by a task-specific attention module. We conduct experiments on the BraTS2021 dataset of 1251 subjects, and results on arbitrary sequence synthesis indicate that the proposed method achieves better performance than the state-of-the-art methods. Our code is available at \url{https://github.com/fiy2W/mri_seq2seq}.

Luyi Han, Tianyu Zhang, Yunzhi Huang, Haoran Dou, Xin Wang, Yuan Gao, Chunyao Lu, Tan Tao, Ritse Mann• 2023

Related benchmarks

TaskDatasetResultRank
Brain Tumor SegmentationBraTS 2020
DSC (WT)83.2
34
Brain Tumor SegmentationBraTS 2020 (val)
Dice Score ET54.68
21
Medical image translationBraTS Average across 14 modality cases 2020
SSIM83.95
12
Medical image translationUCSF Average across 14 modality cases
SSIM86.51
12
Brain MRI SynthesisUCSF-BMSR T1
PSNR23.64
6
Brain MRI SynthesisUCSF-BMSR T1ce
PSNR26.15
6
Brain MRI SynthesisUCSF-BMSR T2
PSNR25.32
6
Brain MRI Synthesis (FLAIR)BraTS 2020
PSNR23.31
6
Brain MRI Synthesis (T1)BraTS 2020
PSNR23.59
6
Brain MRI Synthesis (T2)BraTS 2020
PSNR25.05
6
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