On Learning Necessary and Sufficient Causal Graphs
About
The causal revolution has stimulated interest in understanding complex relationships in various fields. Most of the existing methods aim to discover causal relationships among all variables within a complex large-scale graph. However, in practice, only a small subset of variables in the graph are relevant to the outcomes of interest. Consequently, causal estimation with the full causal graph -- particularly given limited data -- could lead to numerous falsely discovered, spurious variables that exhibit high correlation with, but exert no causal impact on, the target outcome. In this paper, we propose learning a class of necessary and sufficient causal graphs (NSCG) that exclusively comprises causally relevant variables for an outcome of interest, which we term causal features. The key idea is to employ probabilities of causation to systematically evaluate the importance of features in the causal graph, allowing us to identify a subgraph relevant to the outcome of interest. To learn NSCG from data, we develop a necessary and sufficient causal structural learning (NSCSL) algorithm, by establishing theoretical properties and relationships between probabilities of causation and natural causal effects of features. Across empirical studies of simulated and real data, we demonstrate that NSCSL outperforms existing algorithms and can reveal crucial yeast genes for target heritable traits of interest.
Related benchmarks
| Task | Dataset | Result | Rank | |
|---|---|---|---|---|
| Causal Discovery | Sachs real data d=11 | SHD8 | 19 | |
| Causal Discovery | Nonlinear structural equation model S4 | FDR0.03 | 9 | |
| Causal Discovery | Scale-free (SF) model Scenario S5 p=50 n=1000 Degree=5 (test) | FDR2 | 9 | |
| Causal Structural Learning | Erdős-Rényi (ER) Model n=100 S4 (small) | FDR11 | 9 | |
| Causal Structural Learning | Erdős-Rényi (ER) Model n=1000 S4 (large) | FDR0.00e+0 | 9 | |
| Causal Structural Learning | Erdős-Rényi (ER) Model n=1000 Scenario S5 (small) | FDR2 | 9 | |
| Causal Structural Learning | Erdős-Rényi (ER) Model n=3000 Scenario S5 (large) | FDR0.01 | 9 | |
| Causal Discovery | Yeast gene data YER124C | Total Edges11 | 8 | |
| Causal Discovery | Scenario S1 (n=30) synthetic (test) | FDR8 | 5 | |
| Causal Discovery | Scenario S1 (n=100) synthetic (test) | FDR2 | 5 |