Hard Negative Sample Mining for Whole Slide Image Classification
About
Weakly supervised whole slide image (WSI) classification is challenging due to the lack of patch-level labels and high computational costs. State-of-the-art methods use self-supervised patch-wise feature representations for multiple instance learning (MIL). Recently, methods have been proposed to fine-tune the feature representation on the downstream task using pseudo labeling, but mostly focusing on selecting high-quality positive patches. In this paper, we propose to mine hard negative samples during fine-tuning. This allows us to obtain better feature representations and reduce the training cost. Furthermore, we propose a novel patch-wise ranking loss in MIL to better exploit these hard negative samples. Experiments on two public datasets demonstrate the efficacy of these proposed ideas. Our codes are available at https://github.com/winston52/HNM-WSI
Related benchmarks
| Task | Dataset | Result | Rank | |
|---|---|---|---|---|
| Slide-level classification | Camelyon16 | AUC0.9604 | 52 | |
| WSI Classification | CAMELYON16 (test) | Avg Acc93.02 | 28 | |
| Mutation Prediction | TCGA-LUAD | EGFR AUC0.7235 | 5 | |
| WSI Classification | TCGA-LUAD mutation (5-fold cross-validation) | AUC (EGFR)0.7235 | 5 |