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Unifying Multiple Foundation Models for Advanced Computational Pathology

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Foundation models have substantially advanced computational pathology by learning transferable visual representations from large histological datasets, yet their performance varies widely across tasks due to differences in training data composition and reliance on proprietary datasets that cannot be cumulatively expanded. Existing efforts to combine foundation models through offline distillation partially mitigate this issue but require dedicated distillation data and repeated retraining to integrate new models. Here we present Shazam, an online integration model that adaptively combines multiple pretrained pathology foundation models within a unified and scalable representation learning paradigm. Our findings show that fusing multi-level features through adaptive expert weighting and online distillation enables efficient consolidation of complementary model strengths without additional pretraining. Across spatial transcriptomics prediction, survival prognosis, tile-level classification, and visual question answering, Shazam consistently outperforms strong individual models, demonstrating that online model integration provides a practical and extensible strategy for advancing computational pathology.

Wenhui Lei, Yusheng Tan, Anqi Li, Hanyu Chen, Hengrui Tian, Ruiying Li, Zhengqun Jiang, Fang Yan, Xiaofan Zhang, Shaoting Zhang• 2025

Related benchmarks

TaskDatasetResultRank
Survival PredictionTCGA-LUAD
C-index0.628
116
Survival PredictionTCGA-COADREAD
C-index71
67
Survival PredictionTCGA-STAD
C-index0.626
52
Survival PredictionKIRC TCGA
C-Index0.742
50
Survival PredictionTCGA-BRCA (test)
Concordance Index (CI)0.67
41
Survival AnalysisTCGA-LUSC
C-index0.583
38
Survival AnalysisTCGA BLCA (test)
C-Index0.608
28
Tile-level classificationBACH
Weighted F1 Score98.7
22
Visual Question AnsweringPathVQA
Accuracy (Closed)57.5
19
Tile-level classificationUniToPatho
BA53.2
14
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