Histopathology Multi-modal Embedding for Pathology Composed Retrieval
About
To overcome the black-box nature of predictive AI and the hallucination risks of generative models, retrieval-based models offer an interpretable, evidence-based paradigm for pathology clinical workflow. However, real-world clinical queries are inherently interleaved (e.g., pathology images and text). Current dual-encoders suffer from an \textbf{Architectural Mismatch}, lacking the mechanism to fuse such composed queries. To address this, we formalize the task of Pathology Composed Retrieval (PCR). While Multimodal Large Language Models (MLLMs) offer deep-fusion capabilities, directly applying them exposes a \textbf{Task Mismatch} and a \textbf{Domain Mismatch}. To resolve these challenges, we propose HOMIE, a model-agnostic adaptation framework that transforms any generative MLLM into a specialized pathology retrieval expert. Evaluated on our newly introduced PCR Benchmark, a lightweight 2B-parameter HOMIE variant substantially outperforms existing paradigms, surpassing specialized 7B pathology MLLMs and dual-encoders by large margins on composed retrieval, while maintaining strong performance on traditional simple retrieval. The project page is available at https://qfchou.github.io/HOMIE_page/.
Related benchmarks
| Task | Dataset | Result | Rank | |
|---|---|---|---|---|
| Composed Retrieval | Bookset Multi-Image to Text | R@179.8 | 33 | |
| Composed Retrieval | Bookset Multi-Text to Image | Recall@152.7 | 33 | |
| Composed Retrieval | Quilt-VQA (test) | R@135.8 | 33 | |
| Composed Retrieval | Quilt-VQA Red | R@10.643 | 33 | |
| Image-to-Text Retrieval | Bookset zero-shot | Recall@1 (zero-shot)34.4 | 22 | |
| Text-to-Image Retrieval | Bookset zero-shot | Recall@131.5 | 22 | |
| Composed Retrieval | Videopath | Recall@130.7 | 10 | |
| Image-to-Text Retrieval | Educontent zero-shot | R@1 (Zero-Shot)12.1 | 4 | |
| Image-to-Text Retrieval | MMUpubmed zero-shot | R@113.3 | 3 | |
| Text-to-Image Retrieval | Educontent zero-shot | R@114.6 | 3 |