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Histopathology Multi-modal Embedding for Pathology Composed Retrieval

About

To overcome the black-box nature of predictive AI and the hallucination risks of generative models, retrieval-based models offer an interpretable, evidence-based paradigm for pathology clinical workflow. However, real-world clinical queries are inherently interleaved (e.g., pathology images and text). Current dual-encoders suffer from an \textbf{Architectural Mismatch}, lacking the mechanism to fuse such composed queries. To address this, we formalize the task of Pathology Composed Retrieval (PCR). While Multimodal Large Language Models (MLLMs) offer deep-fusion capabilities, directly applying them exposes a \textbf{Task Mismatch} and a \textbf{Domain Mismatch}. To resolve these challenges, we propose HOMIE, a model-agnostic adaptation framework that transforms any generative MLLM into a specialized pathology retrieval expert. Evaluated on our newly introduced PCR Benchmark, a lightweight 2B-parameter HOMIE variant substantially outperforms existing paradigms, surpassing specialized 7B pathology MLLMs and dual-encoders by large margins on composed retrieval, while maintaining strong performance on traditional simple retrieval. The project page is available at https://qfchou.github.io/HOMIE_page/.

Qifeng Zhou, Wenliang Zhong, Thao M. Dang, Hehuan Ma, Saiyang Na, Yuzhi Guo, Junzhou Huang• 2025

Related benchmarks

TaskDatasetResultRank
Composed RetrievalBookset Multi-Image to Text
R@179.8
33
Composed RetrievalBookset Multi-Text to Image
Recall@152.7
33
Composed RetrievalQuilt-VQA (test)
R@135.8
33
Composed RetrievalQuilt-VQA Red
R@10.643
33
Image-to-Text RetrievalBookset zero-shot
Recall@1 (zero-shot)34.4
22
Text-to-Image RetrievalBookset zero-shot
Recall@131.5
22
Composed RetrievalVideopath
Recall@130.7
10
Image-to-Text RetrievalEducontent zero-shot
R@1 (Zero-Shot)12.1
4
Image-to-Text RetrievalMMUpubmed zero-shot
R@113.3
3
Text-to-Image RetrievalEducontent zero-shot
R@114.6
3
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