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Node Embeddings via Neighbor Embeddings

About

Node embeddings are a paradigm in non-parametric graph representation learning, where graph nodes are embedded into a given vector space to enable downstream processing. State-of-the-art node-embedding algorithms, such as DeepWalk and node2vec, are based on random-walk notions of node similarity and on contrastive learning. In this work, we introduce the graph neighbor-embedding (graph NE) framework that directly pulls together embedding vectors of adjacent nodes without relying on any random walks. We show that graph NE strongly outperforms state-of-the-art node-embedding algorithms in terms of local structure preservation. Furthermore, we apply graph NE to the 2D node-embedding problem, obtaining graph t-SNE layouts that also outperform existing graph-layout algorithms.

Jan Niklas B\"ohm, Marius Keute, Alica Guzm\'an, Sebastian Damrich, Andrew Draganov, Dmitry Kobak• 2025

Related benchmarks

TaskDatasetResultRank
Node ClassificationPhoto (test)
Mean Accuracy94.3
241
Link PredictionCiteseer
AUC100
174
Link PredictionCora
AUC (Cora)100
94
Node ClassificationCora (random)
Accuracy84.3
79
Link PredictionPhoto
AUC-ROC99.7
52
Link PredictionComputers
AUC-ROC99.4
50
Link PredictionarXiv
AUC100
40
Link PredictionPubmed
AUC-ROC100
29
2-hop neighbor recallCiteseer
Top-10 2-hop Neighbor Recall44.5
12
2-hop neighbor recallCora
Top-10 2-hop Neighbor Recall46.3
12
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