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Understanding Virtual Nodes: Oversquashing and Node Heterogeneity

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While message passing neural networks (MPNNs) have convincing success in a range of applications, they exhibit limitations such as the oversquashing problem and their inability to capture long-range interactions. Augmenting MPNNs with a virtual node (VN) removes the locality constraint of the layer aggregation and has been found to improve performance on a range of benchmarks. We provide a comprehensive theoretical analysis of the role of VNs and benefits thereof, through the lenses of oversquashing and sensitivity analysis. First, we characterize, precisely, how the improvement afforded by VNs on the mixing abilities of the network and hence in mitigating oversquashing, depends on the underlying topology. We then highlight that, unlike Graph-Transformers (GTs), classical instantiations of the VN are often constrained to assign uniform importance to different nodes. Consequently, we propose a variant of VN with the same computational complexity, which can have different sensitivity to nodes based on the graph structure. We show that this is an extremely effective and computationally efficient baseline for graph-level tasks.

Joshua Southern, Francesco Di Giovanni, Michael Bronstein, Johannes F. Lutzeyer• 2024

Related benchmarks

TaskDatasetResultRank
Node ClassificationCiteseer (test)
Accuracy0.7452
1013
Node ClassificationCora (test)
Mean Accuracy83.7
951
Node ClassificationChameleon (test)
Mean Accuracy66.52
425
Node ClassificationCornell (test)
Mean Accuracy44.44
403
Node ClassificationTexas (test)
Mean Accuracy46.67
402
Node ClassificationSquirrel (test)
Mean Accuracy53.19
353
Node ClassificationWisconsin (test)
Mean Accuracy69.6
346
Node ClassificationActor (test)
Mean Accuracy0.2916
339
Node ClassificationPubMed (test)
Accuracy87.02
198
Graph RegressionPeptides-struct
MAE0.2458
156
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