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TxGemma: Efficient and Agentic LLMs for Therapeutics

About

Therapeutic development is a costly and high-risk endeavor that is often plagued by high failure rates. To address this, we introduce TxGemma, a suite of efficient, generalist large language models (LLMs) capable of therapeutic property prediction as well as interactive reasoning and explainability. Unlike task-specific models, TxGemma synthesizes information from diverse sources, enabling broad application across the therapeutic development pipeline. The suite includes 2B, 9B, and 27B parameter models, fine-tuned from Gemma-2 on a comprehensive dataset of small molecules, proteins, nucleic acids, diseases, and cell lines. Across 66 therapeutic development tasks, TxGemma achieved superior or comparable performance to the state-of-the-art generalist model on 64 (superior on 45), and against state-of-the-art specialist models on 50 (superior on 26). Fine-tuning TxGemma models on therapeutic downstream tasks, such as clinical trial adverse event prediction, requires less training data than fine-tuning base LLMs, making TxGemma suitable for data-limited applications. Beyond these predictive capabilities, TxGemma features conversational models that bridge the gap between general LLMs and specialized property predictors. These allow scientists to interact in natural language, provide mechanistic reasoning for predictions based on molecular structure, and engage in scientific discussions. Building on this, we further introduce Agentic-Tx, a generalist therapeutic agentic system powered by Gemini 2.5 that reasons, acts, manages diverse workflows, and acquires external domain knowledge. Agentic-Tx surpasses prior leading models on the Humanity's Last Exam benchmark (Chemistry & Biology) with 52.3% relative improvement over o3-mini (high) and 26.7% over o3-mini (high) on GPQA (Chemistry) and excels with improvements of 6.3% (ChemBench-Preference) and 2.4% (ChemBench-Mini) over o3-mini (high).

Eric Wang, Samuel Schmidgall, Paul F. Jaeger, Fan Zhang, Rory Pilgrim, Yossi Matias, Joelle Barral, David Fleet, Shekoofeh Azizi• 2025

Related benchmarks

TaskDatasetResultRank
ADMET Properties PredictionTDC Half Life Obach
Spearman Correlation0.458
12
ADMET Properties PredictionTDC Caco2 Wang
MAE0.401
12
ADMET Properties PredictionTDC PPBR AZ
MAE9.048
12
ADMET Properties PredictionTDC DILI
AUROC88.6
12
Gene regulation direction predictionLINCSQA L1000
Accuracy (Bone marrow)0.47
9
ADMET Properties PredictionTDC hERG
AUROC88.5
7
ADMET Properties PredictionTDC Pgp Broccatelli
AUROC93.7
7
ADMET Properties PredictionTDC HIA Hou
AUROC98.8
7
ADMET Properties PredictionTDC CYP2D6 Substrate CM
AUPRC71.1
7
ADMET Properties PredictionTDC CYP2D6 Veith
AUPRC68.3
7
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