Multi-Resolution Pathology-Language Pre-training Model with Text-Guided Visual Representation
About
In Computational Pathology (CPath), the introduction of Vision-Language Models (VLMs) has opened new avenues for research, focusing primarily on aligning image-text pairs at a single magnification level. However, this approach might not be sufficient for tasks like cancer subtype classification, tissue phenotyping, and survival analysis due to the limited level of detail that a single-resolution image can provide. Addressing this, we propose a novel multi-resolution paradigm leveraging Whole Slide Images (WSIs) to extract histology patches at multiple resolutions and generate corresponding textual descriptions through advanced CPath VLM. We introduce visual-textual alignment at multiple resolutions as well as cross-resolution alignment to establish more effective text-guided visual representations. Cross-resolution alignment using a multimodal encoder enhances the model's ability to capture context from multiple resolutions in histology images. Our model aims to capture a broader range of information, supported by novel loss functions, enriches feature representation, improves discriminative ability, and enhances generalization across different resolutions. Pre-trained on a comprehensive TCGA dataset with 34 million image-language pairs at various resolutions, our fine-tuned model outperforms state-of-the-art (SOTA) counterparts across multiple datasets and tasks, demonstrating its effectiveness in CPath. The code is available on GitHub at: https://github.com/BasitAlawode/MR-PLIP
Related benchmarks
| Task | Dataset | Result | Rank | |
|---|---|---|---|---|
| Semantic segmentation | DigestPath (test) | DSC70.6 | 29 | |
| Nuclei Instance Segmentation | CoNSeP | mPQ52.25 | 28 | |
| Tile-level classification | PatchCamelyon | F196.1 | 24 | |
| WSI Classification | Panda | Accuracy78.6 | 23 | |
| Tile-level classification | BACH | Weighted F1 Score60.5 | 22 | |
| Tile-level classification | NCT-CRC | Weighted F1 Score87.1 | 16 | |
| Tile-level classification | MHIST | F1 (weighted)64.3 | 16 | |
| Tile-level classification | SICAP | Weighted Avg F10.546 | 16 | |
| Tile-level classification | Databiox | Weighted F1 Score0.532 | 16 | |
| Tile-level classification | Osteo | Weighted F1 Score0.656 | 16 |