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Towards Graph Foundation Models: Training on Knowledge Graphs Enables Transferability to General Graphs

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Inspired by the success of large language models, there is a trend toward developing graph foundation models to conduct diverse downstream tasks in various domains. However, current models often require extra fine-tuning to apply their learned structural and semantic representations to new graphs, which limits their versatility. Recent breakthroughs in zero-shot inductive reasoning on knowledge graphs (KGs), offer us a new perspective on extending KG reasoning to general graph applications. In this paper, we introduce SCR, a unified graph reasoning framework designed to train on knowledge graphs and effectively generalize across a wide range of graph tasks and domains. We begin by designing the task-specific KG structures to establish a unified topology for different task formats. Then we propose semantic-conditioned message passing, a novel mechanism addressing the inherent semantic isolation in traditional KG reasoning, by jointly modeling structural and semantic invariance patterns in graph representations. To demonstrate the effectiveness, we evaluate the inductive reasoning capability of SCR using 38 diverse graph datasets, covering node-level, link-level, and graph-level tasks across multiple domains. Our results show substantial performance gains over existing foundation models and supervised baselines, highlighting the efficacy and adaptability of our approach.

Kai Wang, Siqiang Luo, Caihua Shan, Yifei Shen• 2024

Related benchmarks

TaskDatasetResultRank
Graph ClassificationPROTEINS
Accuracy68.54
1252
Graph ClassificationMUTAG
Accuracy85.33
1103
Node ClassificationPubmed
Accuracy82.93
627
Node ClassificationCora
Accuracy81.8
583
Node ClassificationActor
Accuracy23.26
556
Node ClassificationCiteseer
Accuracy71.33
51
Link Prediction16 Knowledge Graphs Inductive (e)
MRR43.5
9
Link Prediction19 Knowledge Graphs Inductive (e, r)
MRR0.32
9
Link Prediction9 Knowledge Graphs Transductive
MRR0.298
9
Link Prediction44 Knowledge Graphs Total Average
MRR0.358
9
Showing 10 of 10 rows

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