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Message-Passing State-Space Models: Improving Graph Learning with Modern Sequence Modeling

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The recent success of State-Space Models (SSMs) in sequence modeling has motivated their adaptation to graph learning, giving rise to Graph State-Space Models (GSSMs). However, existing GSSMs operate by applying SSM modules to sequences extracted from graphs, often compromising core properties such as permutation equivariance, message-passing compatibility, and computational efficiency. In this paper, we introduce a new perspective by embedding the key principles of modern SSM computation directly into the Message-Passing Neural Network framework, resulting in a unified methodology for both static and temporal graphs. Our approach, MP-SSM, enables efficient, permutation-equivariant, and long-range information propagation while preserving the architectural simplicity of message passing. Crucially, MP-SSM enables an exact sensitivity analysis, which we use to theoretically characterize information flow and evaluate issues like vanishing gradients and over-squashing in the deep regime. Furthermore, our design choices allow for a highly optimized parallel implementation akin to modern SSMs. We validate MP-SSM across a wide range of tasks, including node classification, graph property prediction, long-range benchmarks, and spatiotemporal forecasting, demonstrating both its versatility and strong empirical performance.

Andrea Ceni, Alessio Gravina, Claudio Gallicchio, Davide Bacciu, Carola-Bibiane Schonlieb, Moshe Eliasof• 2025

Related benchmarks

TaskDatasetResultRank
Graph RegressionPeptides struct LRGB (test)
MAE0.2458
238
Graph ClassificationPeptides-func LRGB (test)
AP0.6993
196
Node ClassificationAmazon-Ratings (test)
Accuracy53.65
155
Node ClassificationMinesweeper (test)
AUROC95.33
134
Node ClassificationTolokers (test)
AUROC85.26
128
Node ClassificationQuestions (test)
AUROC78.18
83
Spatio-temporal forecastingChickenpox Hungary
MSE0.748
44
Spatio-temporal forecastingPedalMe London
MSE0.647
44
Spatio-temporal forecastingWikipedia Math
MSE0.509
44
Traffic ForecastingMETR-LA Horizon 12
MAE3.17
27
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