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HYPER: A Foundation Model for Inductive Link Prediction with Knowledge Hypergraphs

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Inductive link prediction with knowledge hypergraphs is the task of predicting missing hyperedges involving completely novel entities (i.e., nodes unseen during training). Existing methods for inductive link prediction with knowledge hypergraphs assume a fixed relational vocabulary and, as a result, cannot generalize to knowledge hypergraphs with novel relation types (i.e., relations unseen during training). Inspired by knowledge graph foundation models, we propose HYPER as a foundation model for link prediction, which can generalize to any knowledge hypergraph, including novel entities and novel relations. Importantly, HYPER can learn and transfer across different relation types of varying arities, by encoding the entities of each hyperedge along with their respective positions in the hyperedge. To evaluate HYPER, we construct 16 new inductive datasets from existing knowledge hypergraphs, covering a diverse range of relation types of varying arities. Empirically, HYPER consistently outperforms all existing methods in both node-only and node-and-relation inductive settings, showing strong generalization to unseen, higher-arity relational structures.

Xingyue Huang, Mikhail Galkin, Michael M. Bronstein, \.Ismail \.Ilkan Ceylan• 2025

Related benchmarks

TaskDatasetResultRank
Link PredictionWN18 Inductive (test)
MRR44.6
21
Link PredictionJF node-inductive (test)
MRR46.3
18
Link PredictionMFB-IND node-inductive (test)
MRR0.497
18
Inductive Knowledge Hypergraph Link PredictionJF 25
MRR21.6
15
Inductive Knowledge Hypergraph Link PredictionJF 50
MRR0.455
15
Inductive Knowledge Hypergraph Link PredictionJF 75
MRR0.213
15
Inductive Knowledge Hypergraph Link PredictionJF 100
MRR18.1
15
Inductive Knowledge Hypergraph Link PredictionMFB 25
MRR36.3
15
Inductive Knowledge Hypergraph Link PredictionMFB 50
MRR0.25
15
Inductive Knowledge Hypergraph Link PredictionMFB 100
MRR0.299
15
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