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ChemAmp: Amplified Chemistry Tools via Composable Agents

About

Although LLM-based agents are proven to master tool orchestration in scientific fields, particularly chemistry, their single-task performance remains limited by underlying tool constraints. To this end, we propose tool amplification, a novel paradigm that enhances the collective capabilities of specialized tools through optimized, dynamic coordination within individual tasks. Instantiating this paradigm, we introduce ChemAmp, a computationally lightweight framework that dynamically treats chemistry tools (e.g., UniMol2, Chemformer) as composable building-block agents. It constructs task-specialized super-agents that transcend atomic tool constraints with limited data ($\leq$10 samples). Our evaluations across four core chemistry tasks molecular design, molecule captioning, reaction prediction, and property prediction demonstrate that ChemAmp outperforms chemistry-specialized models, generalist LLMs, and agent systems with tool orchestration. Critically, this bottom-up construction strategy enables 94\% inference token cost reductions versus vanilla multi-agent systems.

Zhucong Li, Powei Chang, Jin Xiao, Zhijian Zhou, Qianyu He, Jiaqing Liang, Fenglei Cao, Xu Yinghui, Yuan Qi• 2025

Related benchmarks

TaskDatasetResultRank
Molecule CaptioningChEBI-20 MM (test)
BLEU-20.73
12
Reaction predictionUSPTO-MIT
Exact Match91
12
Text-based Molecule DesignChEBI-20-MM
Exact Match38
11
Molecular property predictionMoleculeNet BBBP
Accuracy68
9
Molecular property predictionMoleculeNet ClinTox
Accuracy67
9
Molecular property predictionMoleculeNet HIV
Accuracy96
9
Molecular property predictionMoleculeNet BACE
Accuracy79
8
Molecular property predictionMoleculeNet tox21
Accuracy96
8
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