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Information Bottleneck-Guided Heterogeneous Graph Learning for Interpretable Neurodevelopmental Disorder Diagnosis

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Developing interpretable models for neurodevelopmental disorders (NDDs) diagnosis presents significant challenges in effectively encoding, decoding, and integrating multimodal neuroimaging data. While many existing machine learning approaches have shown promise in brain network analysis, they typically suffer from limited interpretability, particularly in extracting meaningful biomarkers from functional magnetic resonance imaging (fMRI) data and establishing clear relationships between imaging features and demographic characteristics. Besides, current graph neural network methodologies face limitations in capturing both local and global functional connectivity patterns while simultaneously achieving theoretically principled multimodal data fusion. To address these challenges, we propose the Interpretable Information Bottleneck Heterogeneous Graph Neural Network (I2B-HGNN), a unified framework that applies information bottleneck principles to guide both brain connectivity modeling and cross-modal feature integration. This framework comprises two complementary components. The first is the Information Bottleneck Graph Transformer (IBGraphFormer), which combines transformer-based global attention mechanisms with graph neural networks through information bottleneck-guided pooling to identify sufficient biomarkers. The second is the Information Bottleneck Heterogeneous Graph Attention Network (IB-HGAN), which employs meta-path-based heterogeneous graph learning with structural consistency constraints to achieve interpretable fusion of neuroimaging and demographic data. The experimental results demonstrate that I2B-HGNN achieves superior performance in diagnosing NDDs, exhibiting both high classification accuracy and the ability to provide interpretable biomarker identification while effectively analyzing non-imaging data.

Yueyang Li, Lei Chen, Wenhao Dong, Shengyu Gong, Zijian Kang, Boyang Wei, Weiming Zeng, Hongjie Yan, Lingbin Bian, Zhiguo Zhang, Wai Ting Siok, Nizhuan Wang• 2025

Related benchmarks

TaskDatasetResultRank
Diagnosis classificationADHD-200
Accuracy81.4
44
Diagnostic ClassificationABIDE-I AAL116 atlas
Accuracy87.5
22
Diagnostic ClassificationADHD-200 KKI
Accuracy78.3
16
Diagnostic ClassificationADHD-200 UP
Accuracy77.5
16
Diagnostic ClassificationADHD-200 PKU
Accuracy81.5
16
DiagnosisADHD-200 AAL116 atlas (test)
Accuracy77.31
14
Diagnostic ClassificationABIDE-I Schaefer atlas
Accuracy79.34
14
Neurodevelopmental Disorder DiagnosisADHD-200 Schaefer atlas (test)
Accuracy77.1
14
NDD diagnosisABIDE-I Schaefer atlas (Leave-one-site-out cross-validation)
Accuracy81.1
8
Neurodevelopmental Disorder DiagnosisABIDE-I AAL116 atlas (CALTECH)
Accuracy76.3
8
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