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LEAP: Local ECT-Based Learnable Positional Encodings for Graphs

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Graph neural networks (GNNs) largely rely on the message-passing paradigm, where nodes iteratively aggregate information from their neighbors. Yet, standard message passing neural networks (MPNNs) face well-documented theoretical and practical limitations. Graph positional encoding (PE) has emerged as a promising direction to address these limitations. The Euler Characteristic Transform (ECT) is an efficiently computable geometric-topological invariant that characterizes shapes and graphs. In this work, we combine the differentiable approximation of the ECT (DECT) and its local variant ($\ell$-ECT) to propose LEAP, a new end-to-end trainable local structural PE for graphs. We evaluate our approach on multiple real-world datasets as well as on a synthetic task designed to test its ability to extract topological features. Our results underline the potential of LEAP-based encodings as a powerful component for graph representation learning pipelines.

Juan Amboage, Ernst R\"oell, Patrick Schnider, Bastian Rieck• 2025

Related benchmarks

TaskDatasetResultRank
Graph ClassificationDHFR
Accuracy77.6
140
Graph ClassificationBZR
Accuracy84.7
89
Graph ClassificationCOX2 TU Dataset
Accuracy80.1
20
Graph ClassificationLETTER-H TU Dataset
Accuracy81.6
20
Graph ClassificationLETTER-M TU Dataset
Accuracy88.5
20
Graph ClassificationLETTER-L TU Dataset
Accuracy98
20
Graph ClassificationFINGERPRINT TU Dataset
Accuracy56.3
20
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