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Structure is Supervision: Multiview Masked Autoencoders for Radiology

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Building robust medical machine learning systems requires pretraining strategies that exploit the intrinsic structure present in clinical data. We introduce Multiview Masked Autoencoder (MVMAE), a self-supervised framework that leverages the natural multi-view organization of radiology studies to learn view-invariant and disease-relevant representations. MVMAE combines masked image reconstruction with cross-view alignment, transforming clinical redundancy across projections into a powerful self-supervisory signal. We further extend this approach with MVMAE-V2T, which incorporates radiology reports as an auxiliary text-based learning signal to enhance semantic grounding while preserving fully vision-based inference. Evaluated on a downstream disease classification task on three large-scale public datasets, MIMIC-CXR, CheXpert, and PadChest, MVMAE consistently outperforms supervised and vision-language baselines. Furthermore, MVMAE-V2T provides additional gains, particularly in low-label regimes where structured textual supervision is most beneficial. Together, these results establish the importance of structural and textual supervision as complementary paths toward scalable, clinically grounded medical foundation models.

Sonia Laguna, Andrea Agostini, Alain Ryser, Samuel Ruiperez-Campillo, Irene Cannistraci, Moritz Vandenhirtz, Stephan Mandt, Nicolas Deperrois, Farhad Nooralahzadeh, Michael Krauthammer, Thomas M. Sutter, Julia E. Vogt• 2025

Related benchmarks

TaskDatasetResultRank
Disease ClassificationMIMIC-CXR
F1 Score0.3071
12
Chest X-ray classificationPadChest
AUROC (%)89.19
6
Chest X-ray classificationCombined (MIMIC-CXR, CheXpert, PadChest)
AUROC (%)87.43
6
Top-5 Disease ClassificationMIMIC-CXR
Top-5 AUROC0.8918
6
Top-5 Disease ClassificationPadChest
Top-5 AUROC92.92
6
Top-5 Disease ClassificationMIMIC-CXR, CheXpert, PadChest Combined
Top-5 AUROC91.85
6
Chest X-ray classificationCheXpert
AUROC82.48
6
Top-5 Disease ClassificationCheXpert
Top-5 AUROC87.86
6
Probabilistic CalibrationMIMIC-CXR 20K labeled samples
Brier Score0.0832
5
Probabilistic CalibrationCheXpert (20K labeled samples)
Brier Score0.0904
5
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