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Graph Contrastive Learning via Spectral Graph Alignment

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Given augmented views of each input graph, contrastive learning methods (e.g., InfoNCE) optimize pairwise alignment of graph embeddings across views while providing no mechanism to control the global structure of the view specific graph-of-graphs built from these embeddings. We introduce SpecMatch-CL, a novel loss function that aligns the view specific graph-of-graphs by minimizing the difference between their normalized Laplacians. Theoretically, we show that under certain assumptions, the difference between normalized Laplacians provides an upper bound not only for the difference between the ideal Perfect Alignment contrastive loss and the current loss, but also for the Uniformly loss. Empirically, SpecMatch-CL establishes new state of the art on eight TU benchmarks under unsupervised learning and semi-supervised learning at low label rates, and yields consistent gains in transfer learning on PPI-306K and ZINC 2M datasets.

Manh Nguyen• 2025

Related benchmarks

TaskDatasetResultRank
Graph ClassificationMutag (test)
Accuracy90.87
217
Graph ClassificationPROTEINS (test)
Accuracy76.69
180
Graph ClassificationNCI1 (test)
Accuracy81.86
174
Graph ClassificationIMDB-B (test)
Accuracy73.35
134
Graph ClassificationHIV
ROC-AUC0.7625
104
Graph property predictionTox21
ROC-AUC0.7697
101
Graph ClassificationCOLLAB (test)
Accuracy74.26
96
Graph property predictionClinTox
ROC-AUC77.78
94
Graph property predictionBACE
ROC AUC76.93
93
Graph property predictionMUV
ROC-AUC0.7886
87
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