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Zero-shot System for Automatic Body Region Detection for Volumetric CT and MR Images

About

Reliable identification of anatomical body regions is a prerequisite for many automated medical imaging workflows, yet existing solutions remain heavily dependent on unreliable DICOM metadata. Current solutions mainly use supervised learning, which limits their applicability in many real-world scenarios. In this work, we investigate whether body region detection in volumetric CT and MR images can be achieved in a fully zero-shot manner by using knowledge embedded in large pre-trained foundation models. We propose and systematically evaluate three training-free pipelines: (1) a segmentation-driven rule-based system leveraging pre-trained multi-organ segmentation models, (2) a Multimodal Large Language Model (MLLM) guided by radiologist-defined rules, and (3) a segmentation-aware MLLM that combines visual input with explicit anatomical evidence. All methods are evaluated on 887 heterogeneous CT and MR scans with manually verified anatomical region labels. The segmentation-driven rule-based approach achieves the strongest and most consistent performance, with weighted F1-scores of 0.947 (CT) and 0.914 (MR), demonstrating robustness across modalities and atypical scan coverage. The MLLM performs competitively in visually distinctive regions, while the segmentation-aware MLLM reveals fundamental limitations.

Farnaz Khun Jush, Grit Werner, Mark Klemens, Matthias Lenga• 2026

Related benchmarks

TaskDatasetResultRank
Body region detectionTotalSegmentator CT Head 1.0 (test)
Accuracy97.3
4
Body region detectionTotalSegmentator CT Neck 1.0 (test)
Accuracy97.1
4
Body region detectionTotalSegmentator CT Chest 1.0 (test)
Accuracy98.4
4
Body region detectionTotalSegmentator CT (Abdomen) 1.0 (test)
Accuracy97.1
4
Body region detectionTotalSegmentator CT Pelvis 1.0 (test)
Accuracy99.6
4
Body region detectionTotalSegmentator CT Other 1.0 (test)
Precision80
4
Body region detectionMR Images Head
Accuracy95.9
3
Body region detectionMR Images Neck
Accuracy85.7
3
Body region detectionMR Images Chest
Accuracy99.3
3
Body region detectionMR Images Abdomen
Accuracy97.2
3
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