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Brain-OF: An Omnifunctional Foundation Model for fMRI, EEG and MEG

About

Brain foundation models have achieved remarkable advances across a wide range of neuroscience tasks. However, most existing models are limited to a single functional modality, restricting their ability to exploit complementary spatiotemporal dynamics and the collective data scale across imaging techniques. To address this limitation, we propose Brain-OF, the first omnifunctional brain foundation model jointly pretrained on fMRI, EEG and MEG, capable of handling both unimodal and multimodal inputs within a unified framework. To reconcile heterogeneous spatiotemporal resolutions, we introduce the Any-Resolution Neural Signal Sampler, which projects diverse brain signals into a shared semantic space. To further manage semantic shifts, the Brain-OF backbone integrates DINT attention with a Sparse Mixture of Experts, where shared experts capture modality-invariant representations and routed experts specialize in modality-specific semantics. Furthermore, we propose Masked Temporal-Frequency Modeling, a dual-domain pretraining objective that jointly reconstructs brain signals in both the time and frequency domains. Brain-OF is pretrained on a large-scale corpus comprising around 40 datasets and demonstrates superior performance across diverse downstream tasks, highlighting the benefits of joint multimodal integration and dual-domain pretraining.

Hanning Guo, Farah Abdellatif, Hanwen Bi, Andrei Galbenus, Jon. N. Shah, Abigail Morrison, J\"urgen Dammers• 2026

Related benchmarks

TaskDatasetResultRank
Binary classification of normal versus abnormal EEG signalsTUAB
Balanced Accuracy82.87
49
EEG ClassificationCHB-MIT
B-ACC74.87
30
ADHD DiagnosisADHD-200 fMRI
Balanced Accuracy (BAC)63.51
10
Age Group ClassificationLEMON EEG
BAC80.39
10
Alzheimer's disease diagnosisADNI fMRI
Balanced Accuracy71.79
10
Brain Age PredictionCamCAN MEG
MAE7.87
10
Emotion RecognitionSEED-V EEG
Kappa26.36
10
Brain Age PredictionCamCAN fMRI
MAE9.51
10
Age Group ClassificationLEMON fMRI
BAC62.85
10
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