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Symphony for Medical Coding: A Next-Generation Agentic System for Scalable and Explainable Medical Coding

About

Medical coding translates free-text clinical documentation into standardized codes drawn from classification systems that contain tens of thousands of entries and are updated annually. It is central to billing, clinical research, and quality reporting, yet remains largely manual, slow, and error-prone. Existing automated approaches learn to predict a fixed set of codes from labeled data, thereby preventing adaptation to new codes or different coding systems without retraining on different data. They also provide no explanation for their predictions, limiting trust in safety-critical settings. We introduce Symphony for Medical Coding, a system that approaches the task the way expert human coders do: by reasoning over the clinical narrative with direct access to the coding guidelines. This design allows Symphony to operate across any coding system and to provide span-level evidence linking each predicted code to the text that supports it. We evaluate on two public benchmarks and three real-world datasets spanning inpatient, outpatient, emergency, and subspecialty settings across the United States and the United Kingdom. Symphony achieves state-of-the-art results across all settings, establishing itself as a flexible, deployment-ready foundation for automated clinical coding.

Joakim Edin, Andreas Motzfeldt, Simon Flachs, Lars Maal{\o}e• 2026

Related benchmarks

TaskDatasetResultRank
Restricted code system evaluationACI
F1 Score74
12
Restricted code system evaluationMDACE
Recall66
11
Medical CodingACI (non-PHI)
Recall75
7
Medical CodingMDACE
Recall61.8
5
Full code system evaluationCorti proprietary AMB
Recall64.4
5
Full code system evaluationCorti proprietary ED
Recall37.6
5
Full code system evaluationICD-10 UK NEURO
Recall49.6
2
Procedure CodingMDACE ICD-10-PCS
Recall37.5
2
Procedure CodingAMB CPT
Recall51.8
2
Procedure CodingED CPT
Recall48.8
2
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