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GraphPL: Leveraging GNN for Efficient and Robust Modalities Imputation in Patchwork Learning

About

Current research on distributed multi-modal learning typically assumes that clients can access complete information across all modalities, which may not hold in practice. In this paper, we explore patchwork learning, in which the modalities available to different clients vary, and the objective is to impute the missing modalities for each client in an unsupervised manner. Existing methods are shown not to fully utilize the modality information as they tend to rely on only a subset of the observed modalities. To address this issue, we propose GraphPL, which combines graph neural networks with patchwork learning to flexibly integrate all observed modalities and remains robust with noisy inputs. Experimental results show that GraphPL achieves SOTA performance on benchmark datasets. Our results on real-world distributed electronic health record dataset show GraphPL learns strong downstream features and enables tasks like disease prediction via superior modality imputation.

Xingjian Hu, Zuoyu Yan, Jianhua Zhu, Liangcai Gao, Fei Wang, Tengfei Ma• 2026

Related benchmarks

TaskDatasetResultRank
Mortality PredictioneICU
AUC-PRC0.522
53
Medication RecommendationeICU
PR AUC35.8
43
Image ClassificationPMNIST (test)
Accuracy98.5
25
Disease DiagnosiseICU
AUPRC41.2
15
Downstream ClassificationMST (test)
RQ99.2
5
Downstream ClassificationQuad-CelebA (test)
RQ62.5
5
Missing Modality ImputationPolyMNIST (test)
GQ57.6
5
Missing Modality ImputationMST (test)
GQ Score69.1
5
Missing Modality ImputationQuad-CelebA (test)
GQ Score64.9
5
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