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Temporal Motif Signatures for Temporal Graph Neural Networks

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Real temporal interaction streams carry predictive structure in short-horizon motif patterns -- repetition, reciprocity, star diversity, triadic flow -- that vanilla temporal graph neural networks (TGNNs) often fail to expose to their edge scorers. We show this concretely on MOOC interaction prediction, where a small four-feature family of past-window star counts already delivers most of the lift over a strong static GNN. Across a wide set of real and synthetic temporal datasets we find that motif activity organizes consistently along three scale-stable axes (dyadic recency/reciprocity, star diversity, triadic flow), and we use this empirical structure to design a compact 13-coordinate, leakage-safe, candidate-local motif feature map h(u, v, t) that linearly embeds into any static or temporal encoder without architectural changes. A temporal Weisfeiler-Leman (WL) analysis places the augmentation relative to the first level of an anchored temporal-WL hierarchy and exhibits a candidate-anchored pair on which motif features distinguish. We demonstrate empirically that the same augmentation consistently lifts performance across heterogeneous tasks: TGB link-property prediction across all five baselines, edge classification on Bitcoin Alpha/OTC and MOOC, and graph-level classification of synthetic temporal generators.

Dylan Sandfelder, Mihai Cucuringu, Xiaowen Dong• 2026

Related benchmarks

TaskDatasetResultRank
Link PredictionWikiKG90M v2 (test)
MRR0.829
21
Graph-level classificationSynthetic temporal-graph dataset (full)
Accuracy94
8
Link-property predictiontgbl-review v2 (test)
MRR42.4
8
Link-property predictiontgbl-coin v2 (test)
MRR0.832
8
Edge classificationMOOC
PR-AUC0.1702
6
Edge classificationBitcoin-Alpha
PR-AUC0.9703
6
Edge classificationBitcoin-OTC
PR-AUC97.96
6
Edge classificationPaySim (test)
PR AUC44.3
4
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