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Beyond Soft Masks: Hard-Perturbation Mixup Explainer for Robust GNN Explainability

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Graph Neural Networks (GNNs) have demonstrated remarkable performance across a range of applications involving graph-structured data, particularly in high-stakes domains. However, the opaque nature of their decision-making processes limits their trustworthiness and broader adoption. Existing post-hoc explanation methods aim to improve explainability by identifying subgraphs that influence GNN predictions and adopt mixup strategies to alleviate the out-of-distribution (OOD) issue caused by using subgraphs for prediction. Yet, these approaches typically rely on soft masks, which are inherently unable to fully eliminate label-irrelevant information, allowing redundant structures to leak into the mixup process and hindering the resolution of the OOD problem, thereby degrading explanation fidelity. In this work, we propose HPME, a Hard-Perturbation Mixup Explanation framework grounded in a generalized Graph Information Bottleneck, which leverages graph pooling to extract discrete explanatory subgraphs and to yield an information-capacity bound to thoroughly compress label-irrelevant components. Furthermore, we introduce a novel mixup strategy built upon structure-level replacement, generating in-distribution explanations to effectively mitigate the distribution shift. Extensive experiments on diverse tasks demonstrate that HPME achieves state-of-the-art performance in generating robust and interpretable explanations across both synthetic and real-world datasets.

Jialiang Yin, Zheng Zhao, Linsey Pang, Bo Dong, Bin Shi, Jiaxing Zhang• 2026

Related benchmarks

TaskDatasetResultRank
Graph ClassificationBA-2motifs SingleMotif (test)
AUC-ROC0.971
9
Graph ClassificationBA-HouseGrid SingleMotif (test)
AUC-ROC0.965
9
Graph ClassificationSPMotif SingleMotif (test)
AUC-ROC74.8
9
Graph ClassificationBA-HouseAndGrid MultipleMotif (test)
AUC-ROC97.9
9
Graph ClassificationAlkane-Carbonyl MultipleMotif (test)
AUC-ROC94.4
9
Graph ClassificationFluorid-Carbonyl MultipleMotif (test)
AUC-ROC80.7
9
Graph ClassificationBenzene MultipleMotif (test)
AUC-ROC86.1
9
Distribution-shift evaluationTRIANGLES
Cosine Similarity0.985
8
Distribution-shift evaluationBA-HouseGrid
Euclidean Distance0.661
8
Distribution-shift evaluationBENZENE
Cosine Similarity0.941
8
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