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Embracing Intra-Class Heterogeneity for Semi-Supervised Medical Image Segmentation: From Diversity to Precision

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Due to the scarcity of expert-annotated data, Semi-Supervised Medical Image Segmentation (SSMIS) has emerged as a promising approach. Many anatomical structures in medical images exhibit significant intra-class heterogeneity, with different regions showing heterogeneous intensity patterns within the same structure. However, existing methods inadequately exploit this intensity-manifested intra-class heterogeneity, resulting in uniform structural representations and imprecise segmentation. Furthermore, the scarcity of labeled data makes it more difficult to effectively capture such complex heterogeneity. To address this, we propose Multiple Prototype Contrastive Learning (MPCL), an SSMIS framework that possesses better diversity and better precision. It consists of three novel designs: First, we provide structural representations with better diversity and propose Intensity-aligned Heterogeneous Prototype Generation (IHPG) that effectively models intra-class heterogeneity by generating multiple prototypes aligned with intensity characteristics. Second, we further enhance more diverse structural representations and build a solid foundation for more precise segmentation through Prototypical Space Optimization (PSO) that systematically optimizes a more discriminative and generalizable prototypical space. Finally, we achieve segmentation results with better precision through Dual-branch Knowledge Alignment (DKA) that efficiently promotes intra-class heterogeneity knowledge transfer from prototypical space to the segmentation network. Extensive experiments on three medical image datasets with significant intra-class heterogeneity demonstrate that MPCL significantly outperforms existing methods, especially under extremely limited labeled data.

Yuqi Liu, Yufei Chen, Wei Fu, Xiaodong Yue, Shuo Li• 2026

Related benchmarks

TaskDatasetResultRank
Medical Image SegmentationLA--
98
Medical Image SegmentationPancreas-NIH--
70
Medical Image SegmentationLA (10% labels)
Dice Score90.35
46
Medical Image SegmentationBraTS 2019 (10% labeled data)
Dice Score83.4
36
Medical Image SegmentationLA (5% labels)
Dice Score (%)86.91
11
Medical Image SegmentationBraTS 5% labeled setting 2019
Dice Score80.1
9
Medical Image SegmentationPan-NIH 5% labeled
Dice59.01
9
Medical Image SegmentationPan-NIH 10% labeled
Dice76.46
9
Medical Image SegmentationBraTS 100% labeled setting 2019--
1
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