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Document-level phenotype concept recognition on Average BIOC-GS GSC-2024 ID-68
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79.79
Average F1 Score
AutoPCRFT
7.7596
26.4598
45.16
63.8602
Jul 25, 2025
Average F1 Score
Average Rank
Updated 1mo ago
Evaluation Results
Method
Method
Links
Average F1 Score
Average Rank
AutoPCRFT
Category=Prompt Based,...
2025.07
79.79
-
AutoPCR
Category=Prompt Based,...
2025.07
79.62
1.67
PhenoBERT
Category=Neural
2025.07
76.74
4
FastHPOCR
Category=Dictionary Based
2025.07
76.36
3
PhenoTagger
Category=Neural
2025.07
76.02
3.67
PhenoTagger++
Category=Neural
2025.07
75.15
4.33
NCR
Category=Neural
2025.07
72.33
5.67
REAL
Category=Prompt Based,...
2025.07
67.82
6.67
NCBO
Category=Dictionary Based
2025.07
67.39
7.33
OBO
Category=Dictionary Based
2025.07
63.01
9
ClinPhen
Category=Dictionary Based
2025.07
61.37
9.67
Vanilla
Category=Prompt Based,...
2025.07
10.53
11
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