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Benchmarks
Single-Cell Perturbation Prediction on hiPSC temporal CRISPR LOO, DE genes
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94.1
AUC-ROC
SAMS-VAE
58.012
67.381
76.75
86.119
May 25, 2026
AUC-ROC
Delta Pearson
AUPRC
Updated 8d ago
Evaluation Results
Method
Method
Links
AUC-ROC
Delta Pearson
AUPRC
SAMS-VAE
Time=false, Dyn.=false...
2026.05
94.1
0.621
53.4
UCE
Time=true, Dyn.=false,...
2026.05
93.3
0.514
10.1
CITE-VAE
Time=true, Dyn.=true,...
2026.05
93.1
0.691
61.7
ElasticNet
Time=false, Dyn.=false...
2026.05
92.5
-
62.5
scGPT
Time=true, Dyn.=false,...
2026.05
91.9
0.516
9.2
LFADS
Time=true, Dyn.=true,...
2026.05
85.4
0.401
52.8
CellOT
Time=true, Dyn.=true,...
2026.05
78.5
0.161
41.3
Discrepancy-VAE
Time=false, Dyn.=false...
2026.05
62.2
0.232
32.2
RENGE
Time=true, Dyn.=true,...
2026.05
59.4
-
97
scNODE
Time=true, Dyn.=true,...
2026.05
-
0.455
-
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