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SOTA gene expression prediction benchmarks and papers with code | Wizwand
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gene expression prediction
Benchmarks
Dataset Name
SOTA Method
Dataset Name
SOTA Method
Metric
Trend
Results
Last Updated
Kidney
DUET
MSE
0.4067
32
19d ago
HER2
DUET
MSE
0.5248
32
19d ago
Breast Cancer
DUET
MSE
0.2886
32
19d ago
HestBench
MINT
IDC Score
0.655
23
2mo ago
HER2+
STAMP_Con
MSE
0.87
16
3mo ago
HHK
STAMP_Con
MSE
1.233
16
3mo ago
PSC
STAMP_Con
MSE
0.301
16
3mo ago
Lung-ST HEST-1k (test)
RankByGene
MAE
0.648
10
1d ago
Breast-ST2 HEST-1k (test)
RankByGene
MAE
0.447
10
1d ago
Breast-ST1 HEST-1k (test)
RankByGene
MAE
0.472
10
1d ago
Lung-ST
RankByGene
MAE
0.269
8
1d ago
Breast-ST2
RankByGene
MAE
0.396
8
1d ago
Breast-ST1
RankByGene
MAE
0.345
8
1d ago
SpaRED average over seven datasets
HEXST
PCCF
0.4227
8
27d ago
SCC (8-fold cross-val)
HisToGene
MSE
0.3095
8
2mo ago
Her2ST (8-fold cross-val)
FEAST
MSE
0.5761
8
2mo ago
ST-Net (8-fold cross-val)
FEAST
MSE
0.1177
8
2mo ago
IDC Top 50 HVGs
STPath
Macro-Avg PCC
0.629
8
3mo ago
10xProteomic (test)
SGN
PCC@F
8.22
8
3mo ago
STNet (test)
CFNet
PCC@F
2.12
8
3mo ago
HER2+ (test)
MMAP
PCC
0.2619
5
14d ago
Spatial Transcriptomics dataset
T-LVMOGP
MSE
9.189
4
27d ago
Pan-cancer Average Top 50 HVGs
STPath
Macro-Average PCC
0.361
4
3mo ago
SKCM Top 50 HVGs
STPath
Macro PCC
0.588
4
3mo ago
READ Top 50 HVGs
HistoPrism
Macro-Average PCC
0.295
4
3mo ago
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