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SOTA gene expression prediction benchmarks and papers with code | Wizwand
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gene expression prediction
Benchmarks
Dataset Name
SOTA Method
Dataset Name
SOTA Method
Metric
Trend
Results
Last Updated
Kidney
DUET
MSE
0.4067
32
2mo ago
HER2
DUET
MSE
0.5248
32
2mo ago
Breast Cancer
DUET
MSE
0.2886
32
2mo ago
HestBench
MINT
IDC Score
0.655
23
4mo ago
HER2+
STAMP_Con
MSE
0.87
16
4mo ago
HHK
STAMP_Con
MSE
1.233
16
4mo ago
PSC
STAMP_Con
MSE
0.301
16
4mo ago
cSCC
CAMMST
MSE
0.3202
12
1mo ago
Her2ST
CAMMST
MSE
0.3876
12
1mo ago
ST-Net
CAMMST
MSE
0.0865
12
1mo ago
Lung-ST HEST-1k (test)
RankByGene
MAE
0.648
10
1mo ago
Breast-ST2 HEST-1k (test)
RankByGene
MAE
0.447
10
1mo ago
Breast-ST1 HEST-1k (test)
RankByGene
MAE
0.472
10
1mo ago
Lung-ST
RankByGene
MAE
0.269
8
1mo ago
Breast-ST2
RankByGene
MAE
0.396
8
1mo ago
Breast-ST1
RankByGene
MAE
0.345
8
1mo ago
SpaRED average over seven datasets
HEXST
PCCF
0.4227
8
2mo ago
SCC (8-fold cross-val)
HisToGene
MSE
0.3095
8
4mo ago
Her2ST (8-fold cross-val)
FEAST
MSE
0.5761
8
4mo ago
ST-Net (8-fold cross-val)
FEAST
MSE
0.1177
8
4mo ago
IDC Top 50 HVGs
STPath
Macro-Avg PCC
0.629
8
4mo ago
10xProteomic (test)
SGN
PCC@F
8.22
8
4mo ago
STNet (test)
CFNet
PCC@F
2.12
8
4mo ago
Kidney Visium (leave-one-slide-out)
DriftST
PCC-10
0.602
6
18d ago
HER2ST (leave-one-slide-out)
DriftST
PCC-10
0.862
6
18d ago
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