Share your thoughts, 1 month free Claude Pro on usSee more

Protein property prediction

Benchmarks

Dataset Name	SOTA Method	Metric
21 protein property datasets 48 data points (Cross-validation)	KermutSeq-GP	Spearman Correlation6.65	40	1mo ago
21 protein landscapes Unseen mutations 96 data points		Spearman Correlation7.1	31	1mo ago
21 protein landscapes Extrapolation 512 training points	LOCK-GP	Spearman Correlation0.759	22	1mo ago
21 protein landscapes 128 training points (extrapolation)	LOCK-GP	Spearman Correlation0.669	22	1mo ago
21 protein landscapes 1536 train points (cross-val)	LOCK-GP	Spearman Correlation0.867	22	1mo ago
21 protein property datasets 512 data points (Extrapolation)	KermutSeq-GP	Spearman Correlation7.24	18	1mo ago
21 protein property datasets 128 data points (Extrapolation)	KermutSeq-GP	Spearman Correlation6.81	18	1mo ago
Protein Property Prediction multi-task experiment 700 training points (test)	CLOCK-GP+CNN-ZS	Spearman Correlation0.911	14	1mo ago
Protein Property Prediction multi-task experiment 150 train points (test)	CLOCK-GP+CNN-ZS	Spearman Correlation0.852	14	1mo ago
Protein Property Prediction multi-task experiment 50 training points (test)	CLOCK-GP+CNN-ZS	Spearman Corr0.8	14	1mo ago
PFMBench		Antibiotic Resistance Accuracy69	13	2mo ago
21 protein landscapes (val)		Spearman Correlation7.48	9	1mo ago
Protein Property Datasets (Unseen mutations)	Kermut-GP	Spearman Correlation0.629	9	1mo ago
21 protein property datasets (Cross-validation)	LOCK-GP	Spearman Correlation0.867	9	1mo ago
15-task protein benchmark suite (test)	Masked-pos ESM2-150M (Run 2)	Macro Mean Score74.21	9	2mo ago
GB1 Hamming distance cutoff D = 2 (Extrapolation)		Spearman Correlation0.44	6	1mo ago
GB1 (Cross-validation)		Spearman R0.53	6	1mo ago
21 Protein Property Landscapes 512 (Extrapolation train)	LOCK-GP	NLL1.26	5	1mo ago
21 Protein Property Landscapes 128 training data points (Extrapolation)	LOCK-GP	NLL1.95	5	1mo ago
21 Protein Property Landscapes 96 train (Unseen mutations)	LOCK-GP	NLL2.56	5	1mo ago
21 Protein Property Landscapes 1536 (train val)	LOCK-GP	NLL0.112	5	1mo ago
21 Protein Property Landscapes 48 (train Cross-val)	LOCK-GP	NLL0.987	5	1mo ago
TAPE (downstream)	SMA	Remote Homology0.23	4	5mo ago
beta-lactamase-PEER (test)	Masked-pos MLM+JEPA	Win/Loss/Tie Counts4	1	2mo ago

Showing 24 of 24 rows