BC5CDR
Benchmarks
| Task Name | Dataset Name | SOTA Result | Trend | |
|---|---|---|---|---|
| Named Entity Recognition | BC5CDR | F1 Score93.5 | 102 | |
| Named Entity Recognition | BC5CDR (test) | Macro F1 (span-level)94.73 | 80 | |
| Named Entity Recognition | BC5CDR disease | Total F187.2 | 18 | |
| Named Entity Recognition | BC5CDR chem | Total F194.4 | 18 | |
| Named Entity Recognition | BC5CDR 50 instances (test) | F1 Score63.55 | 16 | |
| Named Entity Recognition | BC5CDR 25 instances (test) | F1 Score54.97 | 16 | |
| Biomedical Entity Linking | BC5CDR | Accuracy @194.7 | 15 | |
| Named Entity Recognition | BC5CDR Big Dict (test) | F1 Score90.99 | 11 | |
| Named Entity Recognition | BC5CDR | Macro F189.8 | 9 | |
| LLM-as-a-Judge | BC5CDR (test) | EM48.35 | 8 | |
| Chemical-Disease-Relation Extraction | BC5CDR (test) | Precision49.52 | 8 | |
| Named Entity Recognition | BC5CDR Small Dict (test) | F1 Score76.18 | 8 | |
| Biomedical Entity Linking | BC5CDR (C) (test) | Accuracy@193.5 | 7 | |
| Biomedical Entity Linking | BC5CDR(D) (test) | Accuracy@177 | 7 | |
| Biomedical Named Entity Recognition | BC5CDR-Disease | Strict F1-Score86.11 | 7 | |
| Entity Clustering | BC5CDR BioCreative V | Accuracy92.8 | 7 | |
| Entity Linking | BC5CDR (test) | Recall@10.9326 | 5 | |
| Named Entity Recognition | BC5CDR preprocessed (test) | Micro F1 (excl O)89.73 | 4 | |
| Named Entity Recognition | bc5cdr | Micro F191.5 | 2 | |
| Relation Extraction | BC5CDR | F1 Score50.12 | 1 |
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