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SOTA Biomedical Entity Linking benchmarks and papers with code | Wizwand
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Biomedical Entity Linking
Benchmarks
Dataset Name
SOTA Method
Dataset Name
SOTA Method
Metric
Trend
Results
Last Updated
COMETA
GenBioEL + ANGEL_PT+FT
Acc@1
82.8
20
4mo ago
NCBI
GenBioEL + ANGEL_PT+FT
Acc@1
92.8
20
4mo ago
AAP
GenBioEL + ANGEL_PT+FT
Accuracy@1
90.2
15
4mo ago
BC5CDR
BioBART + ANGEL_FT
Accuracy @1
94.7
15
4mo ago
MM-ST21pv
BioBART + ANGEL_FT
Acc@1
73.4
13
4mo ago
Patent
BioELX retriever+reranker
FR Score
75.2
10
1mo ago
EMEA
BioELX retriever+reranker
Score (ES)
67.1
10
1mo ago
XL-BEL 1.0 (test)
SAPBERT
EN Precision@1
78.7
10
4mo ago
WikiMed DE
BioELX retriever+reranker
DE Score
67.4
9
1mo ago
MedMentions EN (test)
ArboEL
Recall@1
74.7
8
1mo ago
S800 (test)
BiomedBERT-parallel
Accuracy@1
75.7
7
2mo ago
Linnaeus (test)
BeLink-reranker-8B
Top-1 Accuracy
90
7
2mo ago
NLM-Gene (test)
BeLink-reranker-8B
Accuracy@1
51.6
7
2mo ago
GNormPlus (test)
BeLink-reranker-8B
Acc@1
81.5
7
2mo ago
NLM-Chem (test)
Qwen3-reranker-8B
Acc@1
77.6
7
2mo ago
BC5CDR (C) (test)
BeLink-reranker-8B
Accuracy@1
93.5
7
2mo ago
BC5CDR(D) (test)
BeLink-reranker-4B
Accuracy@1
77
7
2mo ago
NCBI-Dis (test)
Qwen3-reranker-8B
Accuracy@1
74.8
7
2mo ago
AskAPatient
SapBERT
Acc@1
70.5
5
4mo ago
BC5-c
SapBERT
Acc@1
96.5
5
4mo ago
BC5-d
SapBERT
Accuracy@1
93.5
5
4mo ago
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